PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00603.130
Common NameJCGZ_05557, LOC105628120
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ARF
Protein Properties Length: 807aa    MW: 89262.6 Da    PI: 7.2151
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00603.130genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.94.7e-24156257199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F   + ++
  Jcr4S00603.130 156 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGED 247
                     99****************************963.3445679************************************************..4499 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+++++r+
  Jcr4S00603.130 248 GELRLGIRRA 257
                     99*****996 PP
2Auxin_resp95.39.4e-323193831882
      Auxin_resp  18 rastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     ras++eFvv+++k++k++ ++v++G+Rfkm+fe++ds+ rr+sG+v+g+sdldp+rWpnSkWr+L
  Jcr4S00603.130 319 RASHAEFVVPCKKYMKSIMNPVCIGTRFKMRFEMDDSPDRRCSGVVTGISDLDPYRWPNSKWRCL 383
                     89**************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-44148268IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-41150268IPR015300DNA-binding pseudobarrel domain
CDDcd100175.47E-23154256No hitNo description
PROSITE profilePS5086313.169156258IPR003340B3 DNA binding domain
SMARTSM010196.8E-24156258IPR003340B3 DNA binding domain
PfamPF023623.6E-22156257IPR003340B3 DNA binding domain
PfamPF065072.1E-25319383IPR010525Auxin response factor
PfamPF023093.8E-6676767IPR033389AUX/IAA domain
SuperFamilySSF542779.16E-10679762No hitNo description
PROSITE profilePS5174521.39683767IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    Send to blast
MEIDLNHAVT EVEKNAFCTT GDSSSSSCSS NSSPSPVSSS IYLELWHACA GPLTSLPKKG  60
NVVVYFPQGH LEQVASSSPF SPVEMPTFDL QPQIFCKVVN VQLLANKEND EVYTQLTLLP  120
QPELAGQNLE GKELEELGVD DEGAGGLPAK STPHMFCKTL TASDTSTHGG FSVPRRAAED  180
CFPPLDYKQQ RPSQELVAKD LHGVEWRFRH IYRGQPRRHL LTTGWSIFVS QKNLVSGDAV  240
LFLRGEDGEL RLGIRRAARP RNGLPDSVIG KHNSYPSILS LAANAISTKS MFNVLYSPRS  300
HKFKPWQPTP LANSKRCLRA SHAEFVVPCK KYMKSIMNPV CIGTRFKMRF EMDDSPDRRC  360
SGVVTGISDL DPYRWPNSKW RCLMVRWDED IASDHQERVS PWEIDPSVSL PPLSIQSSPR  420
LKKLRTGLPA TPPDNPITGG GGLLDFEESG RPSKVLQGQE NVGFVSPLYG CDTLNRPPDF  480
EMRNPAHQNL VSNGREKANI SEITRARSTT YTGFAETDRF PKVLQGQEIC PLRSLTAKGD  540
FNLGAWGKPN IGCGSFNVYH APRPNFYPLA AENLQNMYFP YGGLYKTSQD PRMRSYATDF  600
PRENFQFGAP SIQTSVARDE VGKPNKSNEH KSQETISASP TIGVNLMNQK DNSFNRAGGG  660
CKLFGFSLTA DSPAPNSQNS GKRSCTKVHK QGSLVGRAID LSRLNGYGDL LSELERLFSM  720
EGLLRDPNKG WRILYTDSEN DVMVVGDDPW HEFCNVVSKI HIYTQEEVEK MTIGVIGDDT  780
QSCLDQAPVL MEASKSSSVG QPDSSPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-120274062354Auxin response factor 1
4ldy_B1e-120274062354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012064855.10.0auxin response factor 4 isoform X1
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A067LHL50.0A0A067LHL5_JATCU; Auxin response factor
STRINGXP_002526369.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52363252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  4. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  5. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  6. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  7. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]