PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00541.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | NF-YB | ||||||||
Protein Properties | Length: 327aa MW: 36571.4 Da PI: 4.8543 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 63.5 | 4.4e-20 | 2 | 73 | 14 | 85 |
NF-YB 14 srimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 ++i+k++lP + ++++da++++ ec +efi +v+se+++ c +e+++ti+++ +l al lGf +y+e++ + Jcr4S00541.20 2 TKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFGEYIEEVYA 73 68******************************************************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.83E-30 | 2 | 121 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.8E-33 | 2 | 119 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.3E-18 | 2 | 59 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
TIGRFAMs | TIGR01570 | 1.9E-63 | 164 | 327 | IPR006460 | Protein of unknown function DUF617, plant |
Pfam | PF04759 | 1.3E-68 | 164 | 326 | IPR006460 | Protein of unknown function DUF617, plant |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESNE VCSKEEKRTI APEHVLKALE 60 VLGFGEYIEE VYAAYEQHKL ETMDSLKGGK WSNGAEMTEE EAVAEQQRMF AEARARMNGG 120 AIAPKQQPET DRSGKGQIML VSEECWDASS NVDPSRTXXX XXXVIGTLFG YRRGHVHFAF 180 QRDPISPPAF LIELATPISG LVREMASGLV RIALECDKED VKQERKSCSA LRLLEEPMWR 240 TYCNGKKCGF AARRECGAKD WKILKAVEPI SMGAGVLPEM GADGDGELMY MRAKFERIVG 300 SRDSEAFYMM NPDSNGAPEL SIYLLRV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 8e-30 | 1 | 114 | 21 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012092937.1 | 1e-120 | protein MIZU-KUSSEI 1 | ||||
TrEMBL | A0A067J8P0 | 1e-119 | A0A067J8P0_JATCU; Uncharacterized protein | ||||
STRING | XP_002511997.1 | 7e-99 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4766 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 2e-77 | nuclear factor Y, subunit B13 |