PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00541.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NF-YB
Protein Properties Length: 327aa    MW: 36571.4 Da    PI: 4.8543
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00541.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB63.54.4e-202731485
          NF-YB 14 srimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85
                   ++i+k++lP + ++++da++++ ec +efi +v+se+++ c +e+++ti+++ +l al  lGf +y+e++ +
  Jcr4S00541.20  2 TKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFGEYIEEVYA 73
                   68******************************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.83E-302121IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.8E-332119IPR009072Histone-fold
PfamPF008088.3E-18259IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
TIGRFAMsTIGR015701.9E-63164327IPR006460Protein of unknown function DUF617, plant
PfamPF047591.3E-68164326IPR006460Protein of unknown function DUF617, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESNE VCSKEEKRTI APEHVLKALE  60
VLGFGEYIEE VYAAYEQHKL ETMDSLKGGK WSNGAEMTEE EAVAEQQRMF AEARARMNGG  120
AIAPKQQPET DRSGKGQIML VSEECWDASS NVDPSRTXXX XXXVIGTLFG YRRGHVHFAF  180
QRDPISPPAF LIELATPISG LVREMASGLV RIALECDKED VKQERKSCSA LRLLEEPMWR  240
TYCNGKKCGF AARRECGAKD WKILKAVEPI SMGAGVLPEM GADGDGELMY MRAKFERIVG  300
SRDSEAFYMM NPDSNGAPEL SIYLLRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B8e-30111421133Transcription Regulator NC2 beta chain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012092937.11e-120protein MIZU-KUSSEI 1
TrEMBLA0A067J8P01e-119A0A067J8P0_JATCU; Uncharacterized protein
STRINGXP_002511997.17e-99(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47663358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.42e-77nuclear factor Y, subunit B13