PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00184.20
Common NameJCGZ_14467, LOC105643057
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ARR-B
Protein Properties Length: 457aa    MW: 51521.4 Da    PI: 4.9425
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00184.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.91.1e-23208261155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    kp+l Wt+eLHerF++a++ L G + A Pk+il++m+v+gL  e++ SHLQkYRl
  Jcr4S00184.20 208 KPKLIWTNELHERFLQAIRLL-GLDSALPKKILKHMNVPGLKKENISSHLQKYRL 261
                    79*******************.********************************8 PP
2Response_reg56.12.1e-19241321109
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                    +l+vd + + + ++ ++l k gy +v +a+  ++al++l+e++   Dlil+ i +p+md +ell+++ + +  lpi+v++a  +e+ +l +l  Ga
  Jcr4S00184.20  24 ILVVDCNSTCLTIVSKMLLKFGY-KVITAKRTTDALRILRERQqdLDLILTEIHLPDMDKYELLETMGQLS-CLPIVVLSADTNENAILGCLFKGA 117
                    89*********************.***************766666**********************9988.9*********************** PP

                    SEEEESS--HHHHHH CS
   Response_reg  95 kdflsKpfdpeelvk 109
                    + +l+Kp+ p ++ +
  Jcr4S00184.20 118 MFYLVKPITPHDIKN 132
                    **********99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.2E-2621175No hitNo description
SuperFamilySSF521721.71E-2522135IPR011006CheY-like superfamily
SMARTSM004487.9E-1722134IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011031.08923138IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.5E-1524132IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.47E-1925135No hitNo description
SuperFamilySSF466891.79E-17206265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-25206265IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-22208261IPR006447Myb domain, plants
PfamPF002498.3E-7213260IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MTKKQVLSVD NGETAQSGSV GISILVVDCN STCLTIVSKM LLKFGYKVIT AKRTTDALRI  60
LRERQQDLDL ILTEIHLPDM DKYELLETMG QLSCLPIVVL SADTNENAIL GCLFKGAMFY  120
LVKPITPHDI KNLWQFSYVK KHEEGVQTEG AMSFRGKSPP DNVSNEPSEC LSFLDSGEQS  180
VRKGKRKASE EIDGNKEEDN ASSKVSKKPK LIWTNELHER FLQAIRLLGL DSALPKKILK  240
HMNVPGLKKE NISSHLQKYR LSLRREQEAI QKTMLRDYQL SSFDLQCENF EYLKPQFLIT  300
NSEPEFRSHA QNPKYVNGSI CMPSLGGAKF PINLCSNHND MSIPKYNDQE YSTYTSCSVV  360
GITVNDNEDL GSLCHMESEN GEEISKHSTT VYSLGNSGFE RTTDGIEVLG NSSEQQQQLS  420
PPPLLWEQVE DILGAERDEL FDIANSSQMF LEEEDLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-17207265462ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083492.10.0two-component response regulator ORR21
TrEMBLA0A067JXK60.0A0A067JXK6_JATCU; Uncharacterized protein
STRINGcassava4.1_028820m1e-176(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145541114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-53response regulator 2
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]