PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00148.20
Common NameJCGZ_01235, LOC105648783
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 173aa    MW: 18185.8 Da    PI: 4.6291
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00148.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-161464256
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                   +ykGVr++k +g+Wv+eIr+p +   + r +lg++ ++e Aa a++ a  +l+g+
  Jcr4S00148.20 14 KYKGVRRRK-WGKWVSEIRVPGT---QGRLWLGSYSSPEAAAVAHDIASYCLRGH 64
                   8*****998.**********843...48*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.13E-251375No hitNo description
Gene3DG3DSA:3.30.730.101.1E-241474IPR001471AP2/ERF domain
SMARTSM003801.3E-251479IPR001471AP2/ERF domain
PfamPF008471.8E-91464IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-171474IPR016177DNA-binding domain
PROSITE profilePS5103221.7071473IPR001471AP2/ERF domain
PRINTSPR003671.1E-71526IPR001471AP2/ERF domain
PRINTSPR003671.1E-73753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MSGSRTTTTA ETAKYKGVRR RKWGKWVSEI RVPGTQGRLW LGSYSSPEAA AVAHDIASYC  60
LRGHSSIDSL NFPDLMLPAS VRGDISPTSI QKAASDAGMA VDAQMIMNRV GSSDNEVNGN  120
EGSGNGAVLG SETEQLEWGD VGGDGGRGNW SGSGSQSGDS GDSLNISVED YYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1410731072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11521KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090680.11e-122ethylene-responsive transcription factor ERF020
SwissprotQ9C9I83e-41ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A067LJD71e-120A0A067LJD7_JATCU; Uncharacterized protein
STRINGPOPTR_0013s10420.12e-61(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54893054
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.13e-43ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]