PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00132.90
Common NameJCGZ_17971
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family SBP
Protein Properties Length: 480aa    MW: 52818.8 Da    PI: 8.4842
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00132.90genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.72.6e-41187264178
                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                    +CqvegC+ dls+ak+yhr+h+vCe hsk+p v+v+gle+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+q+
  Jcr4S00132.90 187 RCQVEGCNLDLSSAKDYHRKHRVCESHSKCPRVIVAGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKPQP 264
                    6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.9E-34180249IPR004333Transcription factor, SBP-box
PROSITE profilePS5114133.12185262IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.45E-39186267IPR004333Transcription factor, SBP-box
PfamPF031105.3E-31188261IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MSSLSLMEWN TKPPIQWDWE NLIMFNTTNE HPKKLRAAVW EIDGERGIDS AGSFYSSRSG  60
SGSGASGSDL GLASLSKSSK AASINSSSIG EVKTSTFTGE ASEAIPEDSN NDKSFGKVNP  120
TGASSTLDVS VGSGEPLLAL KLGKRTYFED VCAGSNIKTS SFSVTPGSSV SPAKRSKSSS  180
QASPTPRCQV EGCNLDLSSA KDYHRKHRVC ESHSKCPRVI VAGLERRFCQ QCSRFHGLSE  240
FDEKKRSCRR RLSDHNARRR KPQPESVQLN PGRLSYSERQ QMSLVWNRPP LVHSRQIANI  300
SWECPSSSKF TITKECVMKP AKVGVINGQL RLPVNELATS IPMHTHDSKS LLSSKAKVTT  360
AEVLNQGLEE PIISSNVDAT QDLHRALSLL STNSWGSCEP KSISHEQPTH TSHTGLPQLL  420
TQAMPRGSII EPSDYWRTEQ HSDSRVHTLT SENNDSSSYF QEFQLLRTSY DSDFYSSQLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-27179261284squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243260KKRSCRRRLSDHNARRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085695.10.0squamosa promoter-binding-like protein 2
TrEMBLA0A067JVJ10.0A0A067JVJ1_JATCU; Uncharacterized protein
STRINGcassava4.1_006701m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.32e-84squamosa promoter binding protein-like 2
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]