PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00066.310
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ARR-B
Protein Properties Length: 452aa    MW: 50223.4 Da    PI: 6.1999
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00066.310genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like78.39.4e-25205258155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v++Lt+e v+SHLQkYRl
  Jcr4S00066.310 205 KARVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPCLTRESVASHLQKYRL 258
                     68*******************.9*******************************8 PP
2Response_reg71.73e-24191321109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHH.HHHTTTSEEE.....EEESTTTHHHHH CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkei.reeepklpii.....vvtahgeeedal 87 
                     vl+vdD+p+ +++l ++l+k  y ev+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++i  e   +lp+i     +++  g  + ++
  Jcr4S00066.310  19 VLVVDDDPTWLKILSKMLNKCSY-EVTTCGLAREALNLLRERKdsYDIVISDVNMPDMDGFKLLEHIgLEM--DLPVIsqffaMMSVDGGASRVI 110
                     89*********************.***************888889**********************5554..56665554549999999***** PP

                     HHHHTTESEEEESS--HHHHHH CS
    Response_reg  88 ealkaGakdflsKpfdpeelvk 109
                     + ++ Ga d+l Kp+ ++el++
  Jcr4S00066.310 111 KGVQHGACDYLLKPIRMKELRN 132
                     *******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.27E-3216143IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.1E-4116143No hitNo description
SMARTSM004481.3E-2817134IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011038.14418138IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.1E-2119133IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.18E-2920138No hitNo description
Gene3DG3DSA:1.10.10.602.7E-27203263IPR009057Homeodomain-like
SuperFamilySSF466896.27E-17203262IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-22205258IPR006447Myb domain, plants
PfamPF002499.5E-7207257IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MENGSSSPRN DAFPAGLRVL VVDDDPTWLK ILSKMLNKCS YEVTTCGLAR EALNLLRERK  60
DSYDIVISDV NMPDMDGFKL LEHIGLEMDL PVISQFFAMM SVDGGASRVI KGVQHGACDY  120
LLKPIRMKEL RNIWQHVFRK KINVVRDIEI LEGMESIPMG VRNGSDQSDD GHFFCGEDFT  180
STKKRKDVEN KHDDKDPGDN SSTKKARVVW SVDLHQKFVK AVNQIGFDKV GPKKILDLMN  240
VPCLTRESVA SHLQKYRLYL SRLQKENDLK TSIGVIMDSD SCLRDSAGSS GTQKSVNKQQ  300
SDGNDLKTSV SVIKDSDLPL RDSADGFGTQ KSINMKQSDA SNYSYGFPGQ PCFKYNYPSS  360
DSCQSEGTQS SPDILHYGVL QDSFLLHNVE PKSYGSDQEE TISMADPWKD DGVATVPEPE  420
FRNRRSKTDG TGTDPIRTGS GSGSHRFGTN GT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-17201263163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085577.10.0two-component response regulator ORR26 isoform X2
SwissprotQ5N6V81e-126ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A067JSA10.0A0A067JSA1_JATCU; Two-component response regulator
STRINGXP_002515016.11e-173(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-110response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]