PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00017.20

Common Name

JCGZ_25920, LOC105648274

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

MYB_related

Protein Properties

Length: 297aa MW: 32308.7 Da PI: 4.7272

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00017.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43	1e-13	18	74	1	46
TSSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcksrwqk 46 +g W++eEd++l ++ G g +W+ Ia++++ gRt++++k++w++ Jcr4S00017.20 18 KGLWSPEEDDKLMNYMINNGQGcwsdvarnaglqRWSQIAARLP-GRTDNEIKNFWNS 74 678***************************************.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.559	13	80	IPR017930	Myb domain
SuperFamily	SSF46689	5.45E-12	14	82	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.7E-9	16	48	IPR009057	Homeodomain-like
SMART	SM00717	4.0E-10	17	78	IPR001005	SANT/Myb domain
Pfam	PF00249	4.6E-12	18	74	IPR001005	SANT/Myb domain
CDD	cd00167	4.46E-9	21	73	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.0E-12	49	77	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MRKPEASGKN NNNNKLRKGL WSPEEDDKLM NYMINNGQGC WSDVARNAGL QRWSQIAARL 60 PGRTDNEIKN FWNSTIKKRL KNLSSTASPN TSDSSSEPSK EAATMGGGVG VGGFMMISMQ 120 EQGMNPMYLD PSLSSSSSSL SSTSTSMQAM FMNHHPMMDS LPNIDNGLSI YGASVFFNNA 180 PACTTQIGVN GEDLYGNQGI FGSVNIGIEG DLHVPPLEST SIEENTKIDN MYGNKYQHGN 240 VNRIGSNCNN SNNNGNNAEN FGAGIGNLWQ GDLKVGEWDL EELMKDVSSF PFLDFSS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM034662	0.0	KM034662.1 Jatropha curcas clone JcMYB042 MYB family protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012089996.2	1e-176	transcription factor MYB46
TrEMBL	A0A067JRD5	1e-175	A0A067JRD5_JATCU; MYB family protein
STRING	cassava4.1_011597m	1e-127	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF774	34	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12870.1	3e-32	myb domain protein 46

Link Out ? help Back to Top
Entrez Gene	105648274

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]