PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00008.40
Common NameJCGZ_17855, LOC105644985
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 398aa    MW: 44250.7 Da    PI: 6.7942
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00008.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.6e-1760109255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  Jcr4S00008.40  60 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 109
                    59*******.**********93....35999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-2960116IPR001471AP2/ERF domain
PfamPF008474.5E-1160109IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-2160117IPR016177DNA-binding domain
PROSITE profilePS5103222.11560117IPR001471AP2/ERF domain
CDDcd000186.20E-3060116No hitNo description
SMARTSM003802.9E-3260123IPR001471AP2/ERF domain
PRINTSPR003672.3E-96172IPR001471AP2/ERF domain
PRINTSPR003672.3E-98399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEEALRRLNG MTHVQETFSH EPIITDNHKK TINGAPAATT TTTNKRALKE SSGGTSGTMR  60
YRGVRRRPWG RYAAEIRDPQ SKERRWLGTF DTAEEAACAY DCAARAMRGL KARTNFVYPT  120
TDPHCTTDPF LPPFNFSSKQ SQHAIARDLP SRHHNANSSS NWPSFANSPV TDFSTGSIIQ  180
PRSNNASFNM FFRDFLNPSF NHHNQSLYDN QLTYVNGSSS NSATTAFSNG SLVNFSDSSF  240
AGSSSLPVVE NKDNNDNNSC GTDYMEFFPQ EPSDSGLLQE IIQGFFPKSS SSTDKVDSAA  300
KNSMNCSAKS MVAPLSENHR MENSHLVKNE QLGLYFENFH GGQAHFENFN GVNNSHMVPY  360
SNGLMPENLH QMGPESILDD IFQYPDLMKA FAARIQNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-19601161471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085880.10.0ethylene-responsive transcription factor ESR2
TrEMBLA0A067JS360.0A0A067JS36_JATCU; Uncharacterized protein
STRINGcassava4.1_029991m1e-152(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41003256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.15e-16DORNROSCHEN-like
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]