PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc032928.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 163aa    MW: 17447.4 Da    PI: 7.9688
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc032928.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-19856355
                      AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++GVr +  +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g
  Itr_sc032928.1_g00001.1  8 FRGVRKRQ-WGRYAAEIRDP---GKKNRVWLGTFDTAEEAARAYDAAARQFRG 56
                             8****888.**********8...5579***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.89E-18664No hitNo description
PROSITE profilePS5103223.591764IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-32764IPR001471AP2/ERF domain
SMARTSM003801.4E-38770IPR001471AP2/ERF domain
PfamPF008476.4E-13856IPR001471AP2/ERF domain
PRINTSPR003671.6E-10819IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22865IPR016177DNA-binding domain
PRINTSPR003671.6E-103046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
GSDYTANFRG VRKRQWGRYA AEIRDPGKKN RVWLGTFDTA EEAARAYDAA ARQFRGPKAK  60
TNFPLPSENH SPSHSNIVES SASSTSCATS VSVRLDLSIT GFPWRGDPAT GVPVPVLPKC  120
AAPVCAAHSD SDSSSVVDES HFDAGLAKKC LNLDLNLAPP MES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-19765261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-19765564ATERF1
3gcc_A2e-19765564ATERF1
5wx9_A3e-196641372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019194110.18e-46PREDICTED: ethylene-responsive transcription factor 4-like
SwissprotQ9LW493e-40ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A2G9HCE27e-44A0A2G9HCE2_9LAMI; Uncharacterized protein
STRINGXP_009595390.13e-39(Nicotiana tomentosiformis)
STRINGXP_009609806.13e-39(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.15e-25erf domain protein 9