PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ERF

Protein Properties

Length: 178aa MW: 19825.4 Da PI: 9.8375

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc032249.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.4	2e-19	77	127	3	56
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+++AeIrdp +ng +r++lg++ tae+Aa a+++a+ +++g+ Itr_sc032249.1_g00001.1 77 YRGVRRRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEDAALAYDRAAFRMRGA 127 9*****.*******9987..************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	4.23E-29	76	135	No hit	No description
SuperFamily	SSF54171	2.35E-23	76	136	IPR016177	DNA-binding domain
Pfam	PF00847	5.8E-14	76	126	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.579	76	134	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	8.3E-32	76	135	IPR001471	AP2/ERF domain
SMART	SM00380	2.0E-37	76	140	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.2E-11	77	88	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.2E-11	100	116	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MSDFALLESI RRQLLDDFDA PPVFCRRGSL GESGWLSSVD ETPTVAVEMG FYEFPVILDF 60 TAVPPPPPPP PAVKRNYRGV RRRPWGKFAA EIRDPAKNGA RVWLGTYETA EDAALAYDRA 120 AFRMRGARAL LNFPHRINSG EAEPVRITTN KRSASTDCSS SSSTTSENVS FKRWKKTA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-38	72	141	1	70	ATERF1
3gcc_A	2e-38	72	141	1	70	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:12805630, ECO:0000269\|PubMed:9756931}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:12805630}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC405081	2e-33	KC405081.1 Salvia miltiorrhiza ERF1 (ERF1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019190741.1	2e-71	PREDICTED: ethylene-responsive transcription factor 2-like
Swissprot	O80338	6e-45	EF101_ARATH; Ethylene-responsive transcription factor 2
TrEMBL	A0A484L2K0	3e-61	A0A484L2K0_9ASTE; Uncharacterized protein
STRING	GLYMA11G03910.2	2e-46	(Glycine max)
STRING	PGSC0003DMT400067535	6e-47	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47220.1	4e-36	ethylene responsive element binding factor 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]