PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004995.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 313aa    MW: 34537.7 Da    PI: 5.978
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004995.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79.4e-21153203256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  Itr_sc004995.1_g00001.1 153 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAAMAHDKAAYKLRGE 203
                              59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.42E-35152211No hitNo description
SMARTSM003805.3E-37153216IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-23153211IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-32153211IPR001471AP2/ERF domain
PROSITE profilePS5103223.314153210IPR001471AP2/ERF domain
PfamPF008472.7E-14154203IPR001471AP2/ERF domain
PRINTSPR003672.3E-11154165IPR001471AP2/ERF domain
PRINTSPR003672.3E-11176192IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAAAIDVYSS SSPVFADPFS EELMLALQPF MNYSSSSSSP PSPPSSSYYS PEPNVFPGLI  60
PIPFANRTFS DGFVSVGFEQ SGPIGLNQLS QSQILEIQTQ IELQHKQQEE EALAALLSSS  120
SSSPVFTLFQ NQEKSLLGRK AVPMKQAQKP GKLYRGVRQR HWGKWVAEIR LPKNRTRLWL  180
GTFDTAEEAA MAHDKAAYKL RGENARLNFP HFRSILSHGV EGFKPLHSSV VAKLDAICRS  240
LTDNNNNNNI DNSKSNKQQR NSEEPCFAAD NVKTESSSGV GAATSPESEI TLLEWENIIL  300
DKYPSGEIDW AAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21151210363ATERF1
3gcc_A3e-21151210363ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019183706.11e-163PREDICTED: ethylene-responsive transcription factor ERF060-like
TrEMBLB9H5442e-79B9H544_POPTR; ERF family protein
STRINGPOPTR_0005s07900.13e-80(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.13e-43ERF family protein