PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc004116.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 557aa MW: 61848.1 Da PI: 7.2583

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc004116.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.7	4.2e-30	59	143	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r++m+ +r+++lk+plWeevs+km+e g++rs+k+Ckek+en+ k++k++keg+ + + +t+++fdqle Itr_sc004116.1_g00003.1 59 RWPRQETLALLKIRSDMDAVFRDSSLKGPLWEEVSRKMAELGYHRSSKKCKEKFENVFKYHKRTKEGRTAK--SDGKTYRFFDQLE 142 8******************************************************************96..45567*****8 PP trihelix 87 a 87 a Itr_sc004116.1_g00003.1 143 A 143 5 PP
2	trihelix	110.9	7.6e-35	397	482	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev+aLi++r++m+ +++++ k+plWee+s++mr+ g++r+pk+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+qle Itr_sc004116.1_g00003.1 397 RWPKPEVQALIDLRTSMDMKYQENGPKGPLWEEISAAMRRLGYNRNPKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLE 481 8******************************************************************97.99*********8 PP trihelix 87 a 87 a Itr_sc004116.1_g00003.1 482 A 482 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.027	52	116	IPR017877	Myb-like domain
SMART	SM00717	0.0091	56	118	IPR001005	SANT/Myb domain
CDD	cd12203	4.91E-25	58	123	No hit	No description
Pfam	PF13837	5.2E-20	58	143	No hit	No description
PROSITE profile	PS50090	7.654	390	454	IPR017877	Myb-like domain
SMART	SM00717	5.9E-4	394	456	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-4	396	453	IPR009057	Homeodomain-like
Pfam	PF13837	2.0E-23	396	483	No hit	No description
CDD	cd12203	2.24E-28	397	461	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence Send to blast
MLGDPGQMMS SSGGGGTTEA AAESGSATAA SNSGGSSGAG AAPGGIFGEE SERNSGGNRW 60 PRQETLALLK IRSDMDAVFR DSSLKGPLWE EVSRKMAELG YHRSSKKCKE KFENVFKYHK 120 RTKEGRTAKS DGKTYRFFDQ LEAFHTPSPA PPPPMVVGNP PRPVAAAMPH QFTVSSGQNT 180 GSVFPAPLRA AFAPIPAANN AAFPAGNALS YSTSSSTSSD EDIQRRHRKK RKWKEFFERV 240 MGDVIVKQEE MQRKFLEALE KRERDRTVRE DAWRAQETAR IKRERDILLQ ERSMAAAKDA 300 AVINLLQKLS DQNNNVLQIP SITNNSDPII QIQVQIPETL STPPLAPPPP LPQPQEPSPI 360 SVAPPASMPF SIQTPTPEKT AAGENFTPPP PPPSSSRWPK PEVQALIDLR TSMDMKYQEN 420 GPKGPLWEEI SAAMRRLGYN RNPKRCKEKW ENINKYFKKV KESNKRRPED SKTCPYFHQL 480 EALYTTKKAK LEIKPESNPN TARPELTNGD DNNNVDDDGD YDDDEDDAGG YEIAANMQYS 540 LAQQATHSHE EEEEERK

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence Send to blast

MLGDPGQMMS SSGGGGTTEA AAESGSATAA SNSGGSSGAG AAPGGIFGEE SERNSGGNRW  60
PRQETLALLK IRSDMDAVFR DSSLKGPLWE EVSRKMAELG YHRSSKKCKE KFENVFKYHK  120
RTKEGRTAKS DGKTYRFFDQ LEAFHTPSPA PPPPMVVGNP PRPVAAAMPH QFTVSSGQNT  180
GSVFPAPLRA AFAPIPAANN AAFPAGNALS YSTSSSTSSD EDIQRRHRKK RKWKEFFERV  240
MGDVIVKQEE MQRKFLEALE KRERDRTVRE DAWRAQETAR IKRERDILLQ ERSMAAAKDA  300
AVINLLQKLS DQNNNVLQIP SITNNSDPII QIQVQIPETL STPPLAPPPP LPQPQEPSPI  360
SVAPPASMPF SIQTPTPEKT AAGENFTPPP PPPSSSRWPK PEVQALIDLR TSMDMKYQEN  420
GPKGPLWEEI SAAMRRLGYN RNPKRCKEKW ENINKYFKKV KESNKRRPED SKTCPYFHQL  480
EALYTTKKAK LEIKPESNPN TARPELTNGD DNNNVDDDGD YDDDEDDAGG YEIAANMQYS  540
LAQQATHSHE EEEEERK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	223	231	QRRHRKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019190438.1	0.0	PREDICTED: trihelix transcription factor GT-2-like
Swissprot	Q39117	1e-131	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A3Q7JB43	1e-178	A0A3Q7JB43_SOLLC; Uncharacterized protein
STRING	Solyc12g056510.1.1	1e-176	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2402	24	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	9e-80	Trihelix family protein