PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003371.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 305aa    MW: 33936.5 Da    PI: 7.9809
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003371.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-18121170255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrdp+    + +r++lg+f tae Aa a+++a+++++g
  Itr_sc003371.1_g00002.1 121 HYRGVRQRP-WGKFAAEIRDPK----KaARVWLGTFETAEAAALAYDEAALRFKG 170
                              7********.**********94....45************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.7E-32120179IPR001471AP2/ERF domain
CDDcd000187.00E-19121179No hitNo description
SuperFamilySSF541717.19E-21121179IPR016177DNA-binding domain
PfamPF008471.5E-12121170IPR001471AP2/ERF domain
PROSITE profilePS5103223.973121178IPR001471AP2/ERF domain
SMARTSM003801.2E-35121184IPR001471AP2/ERF domain
PRINTSPR003671.1E-10122133IPR001471AP2/ERF domain
PRINTSPR003671.1E-10144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MIEYTQELEA AGFSGVTKEE MRCSTTAELR RGRGEKRPLS SEEEDDHPTT KPLFYSSPQS  60
QHDMSAMVSA LSQVIGCCNN TTTYAPAAAS IPALHHQSPQ PNLHHQQQPP AGGGVNQRKR  120
HYRGVRQRPW GKFAAEIRDP KKAARVWLGT FETAEAAALA YDEAALRFKG NKAKLNFPER  180
VQGRTQFGYL TTRQDLPIVS SSNNHLYSSS ASNSHTTTYP NVDHYAHLLG RAHLLPNFEV  240
STTHMFQPPP ADRPAACFQQ LPNNNYLFPF NFGTTTCSSS TSAPNNNHSG KDEWDEDLDF  300
KNTSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-27120181163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019196139.11e-129PREDICTED: ethylene-responsive transcription factor RAP2-7-like
TrEMBLA0A438EZ172e-55A0A438EZ17_VITVI; Ethylene-responsive transcription factor ERF114
STRINGXP_008356833.12e-55(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.11e-34ERF family protein