PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002785.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 293aa    MW: 31996.4 Da    PI: 5.6605
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002785.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-185099255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                             +y+GVr+++ +gr++AeIrdp     +  r +lg+++taeeAa a++ a+++++g
  Itr_sc002785.1_g00001.1 50 KYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTYDTAEEAACAYDSAARNMRG 99
                             8********.**********93....35999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-2950106IPR001471AP2/ERF domain
PfamPF008471.3E-115099IPR001471AP2/ERF domain
SMARTSM003806.7E-3350113IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-2150107IPR016177DNA-binding domain
PROSITE profilePS5103222.19450107IPR001471AP2/ERF domain
CDDcd000183.99E-3050106No hitNo description
PRINTSPR003673.0E-95162IPR001471AP2/ERF domain
PRINTSPR003673.0E-97389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEDAIKRLNG FTDNSSSDLI PPLPKRCGGA TAAGSSPGNR RAASGGVIIK YRGVRRRPWG  60
RYAAEIRDPQ SKERRWLGTY DTAEEAACAY DSAARNMRGV KARTNFIYPP FPGAFHGGVD  120
NSNFPTIVSS HITNQITNPI ISLGDHQLPL IVNDNESHCS SFLTQITAQK PRSVSIFNPS  180
ITLSSLSSPS CADNGDCPKR RSGMEFFESE PPNSGLLGDV LNGFFPKPQA PKSEASTSMC  240
VDAKKSLDDD DDQNAGEFEK LNSSGFDSPP PLHFNGEFPA DDMFNYPEEH FNW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-19501061471Ethylene-responsive transcription factor ERF096
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019160913.11e-150PREDICTED: ethylene-responsive transcription factor ESR2-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-30DORNROSCHEN-like