PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002663.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Trihelix
Protein Properties Length: 515aa    MW: 57858 Da    PI: 8.7662
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002663.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix834e-2691172286
                 trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                              W ++e+laLi +rre+++ ++++k++k+lW+++s kmre+gf rsp++C++kw+nl k++kk k+++ ++    s +++y++++e
  Itr_sc002663.1_g00006.1  91 WVQEETLALISLRREIDSLFNTSKSNKHLWDRISMKMREKGFDRSPTMCTDKWRNLLKEFKKAKQNQDRN---GSAKMSYYKEIE 172
                              *****************************************************************99984...566899***998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.5683147IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.1E-484152IPR009057Homeodomain-like
SMARTSM007173.6E-587149IPR001005SANT/Myb domain
CDDcd122031.03E-2889154No hitNo description
PfamPF138378.5E-2090174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MYMSEKPQPI DFYKAEASAS APADHHHHHH HHHQMMEVAA ANAPLQPHHR QPLLLPGGGN  60
GGDANSSGGE DNTAINPSPD LRAPKKRAET WVQEETLALI SLRREIDSLF NTSKSNKHLW  120
DRISMKMREK GFDRSPTMCT DKWRNLLKEF KKAKQNQDRN GSAKMSYYKE IEEILNERNK  180
NGSGGHKSPS APKVDSFMHF SEKGSRPVEA YPVIYSSTSL QGKSSLDDTN ITFGPVEDSG  240
RPTLNLERRL DHDGHPLAIT AADAVTASGV SPWNWRGTPG NGDQGNVFEG RVISVRWGDY  300
TKRFGIDGSP EAIKEAIKST FGLRTKRAFW LEDEDNIVRA LDRDMPLGNY TLHVDEGNVV  360
EFKYMDMLSM PTPAPAPSSQ RLETTRGVTP SLDGKRSTLV TTRVTRRGLP TPERVVGFPS  420
SSKKKKATKG ENKMETNRQT VLVIVVIIGK RLTVKICLYE EAEDVAFPSE EKTFYSEDDF  480
RDFLSRRGWT CLRDNYRNID SMDELCPGAI YRGVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A3e-4185170186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00640PBMTransfer from MDP0000164819Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019183716.10.0PREDICTED: trihelix transcription factor GT-4-like isoform X1
SwissprotQ9FX531e-127TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A328E5Q20.0A0A328E5Q2_9ASTE; Uncharacterized protein
STRINGXP_009599397.11e-155(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51132136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-129Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]