PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc002663.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | Trihelix | ||||||||
Protein Properties | Length: 515aa MW: 57858 Da PI: 8.7662 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 83 | 4e-26 | 91 | 172 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e+laLi +rre+++ ++++k++k+lW+++s kmre+gf rsp++C++kw+nl k++kk k+++ ++ s +++y++++e Itr_sc002663.1_g00006.1 91 WVQEETLALISLRREIDSLFNTSKSNKHLWDRISMKMREKGFDRSPTMCTDKWRNLLKEFKKAKQNQDRN---GSAKMSYYKEIE 172 *****************************************************************99984...566899***998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 8.56 | 83 | 147 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-4 | 84 | 152 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-5 | 87 | 149 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.03E-28 | 89 | 154 | No hit | No description |
Pfam | PF13837 | 8.5E-20 | 90 | 174 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 515 aa Download sequence Send to blast |
MYMSEKPQPI DFYKAEASAS APADHHHHHH HHHQMMEVAA ANAPLQPHHR QPLLLPGGGN 60 GGDANSSGGE DNTAINPSPD LRAPKKRAET WVQEETLALI SLRREIDSLF NTSKSNKHLW 120 DRISMKMREK GFDRSPTMCT DKWRNLLKEF KKAKQNQDRN GSAKMSYYKE IEEILNERNK 180 NGSGGHKSPS APKVDSFMHF SEKGSRPVEA YPVIYSSTSL QGKSSLDDTN ITFGPVEDSG 240 RPTLNLERRL DHDGHPLAIT AADAVTASGV SPWNWRGTPG NGDQGNVFEG RVISVRWGDY 300 TKRFGIDGSP EAIKEAIKST FGLRTKRAFW LEDEDNIVRA LDRDMPLGNY TLHVDEGNVV 360 EFKYMDMLSM PTPAPAPSSQ RLETTRGVTP SLDGKRSTLV TTRVTRRGLP TPERVVGFPS 420 SSKKKKATKG ENKMETNRQT VLVIVVIIGK RLTVKICLYE EAEDVAFPSE EKTFYSEDDF 480 RDFLSRRGWT CLRDNYRNID SMDELCPGAI YRGVR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 3e-41 | 85 | 170 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00640 | PBM | Transfer from MDP0000164819 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019183716.1 | 0.0 | PREDICTED: trihelix transcription factor GT-4-like isoform X1 | ||||
Swissprot | Q9FX53 | 1e-127 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A328E5Q2 | 0.0 | A0A328E5Q2_9ASTE; Uncharacterized protein | ||||
STRING | XP_009599397.1 | 1e-155 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5113 | 21 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.1 | 1e-129 | Trihelix family protein |
Publications ? help Back to Top | |||
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