PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002389.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 314aa MW: 34875.2 Da PI: 5.4044

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002389.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.5	5.9e-14	111	162	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr l+P++ + ++ + a+i A++Y+k+L+ Itr_sc002389.1_g00003.1 111 QRMTHIAVERNRRKQMNDYLAVLRGLMPES---YVQRGDQASIIGGAINYVKELE 162 79**************************...9****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	6.6E-14	109	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.46E-14	109	166	No hit	No description
PROSITE profile	PS50888	15.434	110	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.13E-16	110	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-11	111	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-9	116	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MALEAMPLQQ DLFCFNYWNY EFEHDENGSF DFPGYPQIPQ DYNYPNWDSP ISHEFQQWVL 60 PNSSPSSELL PSNTEEPAAA VAADCGGVTM PARQRKRRPR TKKNQEEIEN QRMTHIAVER 120 NRRKQMNDYL AVLRGLMPES YVQRGDQASI IGGAINYVKE LEHELQFLSG TKHEKETIHE 180 SSSSSSSSTF AEFFNIPQYS TGITGNVESL SGGAPSELSS GYQLAAAGAA DIEVTMVENH 240 VNLKLRSKRR PKLLPRMISG IESLGLTVLH LNVTKAAAFL LCSLGLKVED GCKLASVDEI 300 AAAVNQILGR IHEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	122	RMTHIAVERNRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019186620.1	1e-176	PREDICTED: transcription factor bHLH96-like
TrEMBL	A0A1S4CNR6	2e-95	A0A1S4CNR6_TOBAC; transcription factor bHLH96-like
STRING	XP_009617734.1	3e-96	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13227	15	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	2e-61	bHLH family protein