PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001546.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 289aa    MW: 31781.5 Da    PI: 5.0269
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001546.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.1e-2079129155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              + y+GVr++  +g+WvAeIr+p+    r  r +lg++gta eAa a+++a+++++g
  Itr_sc001546.1_g00005.1  79 CNYRGVRQRT-WGKWVAEIRVPK----RgSRLWLGTYGTALEAALAYDEAARAMYG 129
                              56*****999.**********83....46************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.7E-1479129IPR001471AP2/ERF domain
CDDcd000181.61E-2979138No hitNo description
SMARTSM003801.6E-3480143IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2080137IPR016177DNA-binding domain
PROSITE profilePS5103220.73280137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-2980138IPR001471AP2/ERF domain
PRINTSPR003672.6E-98192IPR001471AP2/ERF domain
PRINTSPR003672.6E-9103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MVILDDRVSN VGSLPLDKRK TRKRKDGPKN VAETLAKWKE YNEKLDFMEE GGKRVRKAPA  60
KGSKKGCMKG KGGPENVRCN YRGVRQRTWG KWVAEIRVPK RGSRLWLGTY GTALEAALAY  120
DEAARAMYGP CARLNLPNYT KTECSCLPSA SASDSTVASS LCEIETEAAA SSNIEHGDSR  180
GESRNKAPLH SDKGDGGEAR TEEPSDVTAS LDFSWDEMFD VDDILGVLNT PLNVPGVSPG  240
ARSLEDLQQL EQQAPAMDLS FLNQERQDDS LFNLDDAGFL DFNSELGIW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1580137563ATERF1
3gcc_A2e-1580137563ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11825RKTRKRKD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019158214.11e-153PREDICTED: dehydration-responsive element-binding protein 2A-like
TrEMBLA0A1S3ZB335e-78A0A1S3ZB33_TOBAC; dehydration-responsive element-binding protein 2A-like
TrEMBLM1C7N53e-78M1C7N5_SOLTU; Uncharacterized protein
STRINGXP_009594350.18e-79(Nicotiana tomentosiformis)
STRINGPGSC0003DMT4000615415e-79(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37012445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.11e-33DRE-binding protein 2A