PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001447.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 517aa MW: 55500.8 Da PI: 6.7565

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001447.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.4	3.9e-06	389	427	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L++A+eYIk L Itr_sc001447.1_g00001.1 389 VRKEKMGDRITALQQLVSPF-----GKTDTASVLTEAIEYIKFL 427 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.468	378	427	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.95E-7	388	431	No hit	No description
SuperFamily	SSF47459	9.03E-12	388	446	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.1E-10	388	452	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0021	389	433	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence Send to blast
MAEEFQLGSG NWWVSASSSS RNRFDGSSSS SSSAAGAASS ALHMSSNSNS VSMGISSFGW 60 AAPGEVVDIK AAAAARSSLD SASPTPSGGV LVDPNLQIMG LGLSSQPLDW NQSLFRGEKG 120 EQNSYGSMLQ QEMSSNANYH HHHHHHQHQQ ETTSEEQWRQ RVLYSGGGGG SDEASVNDYN 180 KQQQMGGGRA GFSLDQPPAP AHEYLSGGGA STCQGLNTSF ELDSSYGSPS TMLQAGLLAS 240 NSNNQPNFTA RTSMGFPYNN NSPANYGAAG DVMSSSWSKF PQFLRTTSPP KQPQLHFSNN 300 TTFWNATAAA MNDVRSTFFP SLHTQLPSST VDEKPKVIYT PSLNLQNVSD VRDLSTSTAA 360 AAKKTSNETP SGKRARNENP SPPMPPFKVR KEKMGDRITA LQQLVSPFGK TDTASVLTEA 420 IEYIKFLHDQ VNALSAPYMK SGSSMQQHQQ MISSEKSKDP EGGARQDLRS RGLCLVPVSS 480 TFPEVQDDDE KGKKYKNDGA SSEGLTGDCW ANSYRAK

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence Send to blast

MAEEFQLGSG NWWVSASSSS RNRFDGSSSS SSSAAGAASS ALHMSSNSNS VSMGISSFGW  60
AAPGEVVDIK AAAAARSSLD SASPTPSGGV LVDPNLQIMG LGLSSQPLDW NQSLFRGEKG  120
EQNSYGSMLQ QEMSSNANYH HHHHHHQHQQ ETTSEEQWRQ RVLYSGGGGG SDEASVNDYN  180
KQQQMGGGRA GFSLDQPPAP AHEYLSGGGA STCQGLNTSF ELDSSYGSPS TMLQAGLLAS  240
NSNNQPNFTA RTSMGFPYNN NSPANYGAAG DVMSSSWSKF PQFLRTTSPP KQPQLHFSNN  300
TTFWNATAAA MNDVRSTFFP SLHTQLPSST VDEKPKVIYT PSLNLQNVSD VRDLSTSTAA  360
AAKKTSNETP SGKRARNENP SPPMPPFKVR KEKMGDRITA LQQLVSPFGK TDTASVLTEA  420
IEYIKFLHDQ VNALSAPYMK SGSSMQQHQQ MISSEKSKDP EGGARQDLRS RGLCLVPVSS  480
TFPEVQDDDE KGKKYKNDGA SSEGLTGDCW ANSYRAK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019192924.1	0.0	PREDICTED: transcription factor bHLH123 isoform X2
TrEMBL	A0A314UY34	1e-130	A0A314UY34_PRUYE; Transcription factor bHLH123
STRING	XP_008226756.1	1e-128	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	5e-56	bHLH family protein