PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001441.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 309aa    MW: 34656 Da    PI: 6.8634
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001441.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.5e-11132176554
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              h  +Er+RR+++  +f  L  +lP +     kK++Ka++Le+A++++k+L
  Itr_sc001441.1_g00003.1 132 HVVAERKRRENLTRKFIALSAILPGL-----KKVDKASVLEEAIKHLKDL 176
                              8899**********************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.634127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-14131193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-13131190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.79E-11132180No hitNo description
PfamPF000109.1E-9132176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-11133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEDSSISWFP EMGEVDDYYD YVDGFIAQNS VTKQEEVQKR SSQSPESYTS DYSIFVPKSN  60
GNNNVSGTTI CFGGGGGSAS PESLDFRADG GFERPVKRLK VDDKKSSSFR VLSGSTKGDD  120
DVRRRCSVAH EHVVAERKRR ENLTRKFIAL SAILPGLKKV DKASVLEEAI KHLKDLTERV  180
NQLEVQGKKT RYEESVVVVK TSLPNIPPDD EDRSCSSDDG RCSDSASPEI EVRFSGDNVL  240
IRLHCSKKRG KSLSFFLREV EMLHLTVVNS FMTPFGKHAM DFTLVAQMDE NFCMKPKDMV  300
KHLQCITRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122139RRRCSVAHEHVVAERKRR
2135140ERKRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019195020.11e-166PREDICTED: transcription factor bHLH25-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA136021316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-40bHLH family protein