PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc001370.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 337aa MW: 36690.7 Da PI: 7.2744

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001370.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	107.2	8.4e-34	184	241	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCts++Cpvkk+vers +dp++v++tYeg+Hnh+ Itr_sc001370.1_g00002.1 184 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCPVKKRVERSYQDPSIVITTYEGQHNHH 241 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-35	168	243	IPR003657	WRKY domain
SuperFamily	SSF118290	8.89E-30	175	243	IPR003657	WRKY domain
PROSITE profile	PS50811	32.799	178	243	IPR003657	WRKY domain
SMART	SM00774	1.9E-39	183	242	IPR003657	WRKY domain
Pfam	PF03106	1.4E-26	184	241	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MSEDLRDLYY HHPFQEDERS HAGFLFSGAA ATSQIHNTTT NNPHHAFLDP PSSYMSFTDH 60 LIGATEFGRP AGFGFSSSAD AAAFSAVKDE QKPSPMKAGD GGGGGGNNNA NETPVTPNSS 120 ISSSSTEAAG DEDSNKASKR DKQAVDASED GEDKKETKGK KKAEKKQRQP RFAFMTKSEV 180 DHLEDGYRWR KYGQKAVKNS PYPRSYYRCT SQKCPVKKRV ERSYQDPSIV ITTYEGQHNH 240 HIPTNLRGTI AGMLPPSLLT PSPLLGAGPP PQISFPPELL AQMTPPHHLF AAHANPFAGA 300 GAGAAAFHPQ NLTQLQLPPD FGLLQDMVPP MFFKQEP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-26	176	243	10	77	Probable WRKY transcription factor 4
2lex_A	6e-26	176	243	10	77	Probable WRKY transcription factor 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019178112.1	1e-161	PREDICTED: probable WRKY transcription factor 28
TrEMBL	A0A068UDG7	1e-104	A0A068UDG7_COFCA; Uncharacterized protein
STRING	XP_009760855.1	9e-96	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1485	24	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	7e-52	WRKY DNA-binding protein 71