PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001240.1_g00007.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 276aa MW: 29857.3 Da PI: 5.9862

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001240.1_g00007.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.2	9.2e-11	158	205	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Itr_sc001240.1_g00007.1 158 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 205 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.62E-9	152	209	No hit	No description
SuperFamily	SSF47459	1.44E-17	152	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-17	154	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.828	154	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-8	158	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.9E-10	160	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MDPPIINEAS FSAANPAAYT LAEIWPFTAS GNGGGHVGGG LGLRMCSFPG LAEAAANSVD 60 ESTVTEQSGS RGNVAGERKR RGVNSGDESS KVVSANDLNE CSDKRMKASE SKDENGGAKV 120 EAESSSRTVS KPAEHSNKPE PPKDYIHVRA RRGQATDSHS LAERARREKI SERMKILQDL 180 VPGCNKVIGK ALVLDEIINY IQSLQCQVEF LSMKLEAVNS RMNPTLEAFS QKDLAPAGFD 240 APGMLLNTQP PREYTQETQH PEWLHMQVGS SFERAT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019154446.1	0.0	PREDICTED: transcription factor bHLH79-like
Swissprot	Q9LV17	2e-81	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A1U8G4D0	1e-136	A0A1U8G4D0_CAPAN; transcription factor bHLH79
TrEMBL	A0A2G3AW72	1e-136	A0A2G3AW72_CAPCH; Transcription factor bHLH79
STRING	XP_009631983.1	1e-132	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1287	24	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	1e-83	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]