PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001176.1_g00024.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 471aa MW: 50662.9 Da PI: 7.1544

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001176.1_g00024.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	21.6	4.7e-07	254	272	1	19
G2-like 1 kprlrWtpeLHerFveave 19 k+r++W+p+LH+rFv+a++ Itr_sc001176.1_g00024.1 254 KARRCWSPDLHRRFVNALQ 272 68***************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.1E-5	252	272	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MLLKSFGDHH LHPHHHNDQT LQKLEEFLSR LEEERLKIDA FKRELPLCMQ LLTNAMEASR 60 QQLQSFRANN NNNHGATRPV LEEFIPLKNS SSPEGTADQK AAAATGDKAN WMTTAQLWSQ 120 GNNSNNNNNN NNESAMQQKL EQIQNKETEI GFCVSPNPQM NNNNGGAFLP FSKDRSGSCP 180 SPTLALASPD GKDVEEKKSL EIVNLGNKCS SNGPATPEQG KSGGCGGGGG GGANLPPPQD 240 SQTAAGTAAQ PHRKARRCWS PDLHRRFVNA LQXPHNLIER LEDAGRRTCT DALLMLFKCW 300 EVLKKYRLHT RRPGPTPQAA AAAAPQLVVL GGIWVPPEYA TAAAAAHGGA QAAAAAAATL 360 YGAAHPTTTH AHHPASQHFS VGHEFYGAPT PAPPPQHLPL HHPLHHPFHM YKPPPQAPES 420 DGRSESIEDG KSESGSWRAD SGGENGGEGR ALAALREDGE VSNGSDITLK F

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MLLKSFGDHH LHPHHHNDQT LQKLEEFLSR LEEERLKIDA FKRELPLCMQ LLTNAMEASR  60
QQLQSFRANN NNNHGATRPV LEEFIPLKNS SSPEGTADQK AAAATGDKAN WMTTAQLWSQ  120
GNNSNNNNNN NNESAMQQKL EQIQNKETEI GFCVSPNPQM NNNNGGAFLP FSKDRSGSCP  180
SPTLALASPD GKDVEEKKSL EIVNLGNKCS SNGPATPEQG KSGGCGGGGG GGANLPPPQD  240
SQTAAGTAAQ PHRKARRCWS PDLHRRFVNA LQXPHNLIER LEDAGRRTCT DALLMLFKCW  300
EVLKKYRLHT RRPGPTPQAA AAAAPQLVVL GGIWVPPEYA TAAAAAHGGA QAAAAAAATL  360
YGAAHPTTTH AHHPASQHFS VGHEFYGAPT PAPPPQHLPL HHPLHHPFHM YKPPPQAPES  420
DGRSESIEDG KSESGSWRAD SGGENGGEGR ALAALREDGE VSNGSDITLK F

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019171025.1	0.0	PREDICTED: myb family transcription factor EFM-like
TrEMBL	A0A1U7ZLX0	1e-120	A0A1U7ZLX0_NELNU; myb family transcription factor EFM-like
STRING	evm.model.supercontig_127.55	1e-122	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8794	22	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	1e-44	G2-like family protein