PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001120.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | WRKY | ||||||||
Protein Properties | Length: 189aa MW: 21150 Da PI: 9.3456 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.5 | 1.2e-32 | 110 | 168 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg H h+ Itr_sc001120.1_g00002.1 110 LDDGYRWRKYGQKAVKNNRFPRSYYRCTHQGCNVKKQVQRLSKDEGVVVTTYEGVHSHP 168 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.7E-34 | 95 | 168 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-29 | 102 | 169 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.033 | 105 | 170 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-38 | 110 | 169 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.2E-26 | 111 | 168 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MDAYPSMFRC SSPSQPYLSL MNMMNNNNGG MESGFLGMKM SAGDVEVPCS EEMKSESICT 60 ATATTENNNG LMEIGAAKSP SSSSAGKKKG EKKMKKARFA FQTRSQVDIL DDGYRWRKYG 120 QKAVKNNRFP RSYYRCTHQG CNVKKQVQRL SKDEGVVVTT YEGVHSHPIE KSTDNFENIL 180 SQMQIYAAF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-28 | 100 | 169 | 7 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 5e-28 | 100 | 169 | 7 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019180912.1 | 1e-104 | PREDICTED: probable WRKY transcription factor 45 isoform X1 | ||||
TrEMBL | A0A1S3Y303 | 4e-71 | A0A1S3Y303_TOBAC; probable WRKY transcription factor 75 | ||||
STRING | XP_009615508.1 | 6e-72 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2204 | 24 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13080.1 | 3e-58 | WRKY DNA-binding protein 75 |