PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001010.1_g00013.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family RAV
Protein Properties Length: 367aa    MW: 40465.6 Da    PI: 10.1596
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001010.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.53.4e-1360108155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s++kGV   + +grW A+I++      ++r++lg+f  +eeAa+a++ a+ +++g
  Itr_sc001010.1_g00013.1  60 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDVAATRFRG 108
                              689***9788.8*********3.....5***********************9998 PP
2B3100.59.7e-32192287190
                              EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                              f+k+ tpsdv+k++rlv+pk++ae+h          ++++ l +ed++g++W+++++y+++s++yvltkGW++Fvk++ Lk+gD+v
  Itr_sc001010.1_g00013.1 192 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqaaAAAAPKGILLNFEDKTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLKAGDVV 277
                              89*************************9999955566999********************************************** PP

                              EEEE-SSSEE CS
                       B3  81 vFkldgrsef 90 
                               F++    e+
  Itr_sc001010.1_g00013.1 278 SFQRAAGPEK 287
                              ***7655444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.96E-1760116IPR016177DNA-binding domain
CDDcd000181.68E-2560115No hitNo description
PfamPF008478.8E-960108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-2161116IPR001471AP2/ERF domain
SMARTSM003803.4E-2761122IPR001471AP2/ERF domain
PROSITE profilePS5103220.23161116IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.106.9E-43182299IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.37E-32188296IPR015300DNA-binding pseudobarrel domain
CDDcd100173.53E-29190281No hitNo description
PROSITE profilePS5086314.325192295IPR003340B3 DNA binding domain
PfamPF023628.7E-29192287IPR003340B3 DNA binding domain
SMARTSM010199.0E-24192296IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDRSSADEST TSDSKSAPAK TTTAKWPAEK LCRMGSGGSV IIDAENGGVE AESSRKLPSS  60
RFKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEEEAARAYD VAATRFRGRE AVTNFNKPLQ  120
IFAEGARNDD VQVAFLNAHS KLEIVDMLRK HTYGEELEQF KAAFGKFRNR SNRKDDNTLE  180
NPNNSSTREP LFEKAVTPSD VGKLNRLVIP KQHAEKHFPL QAAAAAAPKG ILLNFEDKTG  240
KVWRFRYSYW NSSQSYVLTK GWSRFVKEKS LKAGDVVSFQ RAAGPEKQLF IDCKTGPAGS  300
SFVQAQHKTA PAQVVRLFGV NIWKAAAGDV NGNGGEISSC GGVKRLREMD LLLGVDGGKK  360
QRVIDAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-5218929511116DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1709225e-42KJ170922.1 Diospyros kaki ethylene response factor 22 (ERF22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165082.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotP822801e-133RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A3S6ZRG21e-155A0A3S6ZRG2_9APIA; AP2/ERF transcription factor
TrEMBLA0A3S6ZRG71e-156A0A3S6ZRG7_9APIA; AP2/ERF transcription factor
STRINGXP_009613275.11e-151(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29582453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-132related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]