PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000885.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 178aa    MW: 19194.4 Da    PI: 5.2392
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000885.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31e-191767155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             s y+GVr ++ +g+Wv+eIr+p   gk++r++lg+f tae+Aa a++aa++ l+g
  Itr_sc000885.1_g00006.1 17 SPYRGVRKRR-WGKWVSEIREP---GKKTRIWLGSFNTAEMAAVAYDAAALHLRG 67
                             68*****887.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.49E-231776IPR016177DNA-binding domain
PROSITE profilePS5103222.841875IPR001471AP2/ERF domain
SMARTSM003805.4E-371881IPR001471AP2/ERF domain
CDDcd000181.89E-231975No hitNo description
PRINTSPR003672.7E-101930IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-321976IPR001471AP2/ERF domain
PfamPF008472.7E-121967IPR001471AP2/ERF domain
PRINTSPR003672.7E-104157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MDGNTGGRAA GGGAMSSPYR GVRKRRWGKW VSEIREPGKK TRIWLGSFNT AEMAAVAYDA  60
AALHLRGPLA RLNFPSRAHA LPRPASSSPE DIRLAAHEAA SQLEQSMGDT QGASGSGMSN  120
VPPVTIGLSQ SQIQALNDIP LGSPKIWDGM TNESMFFSND YEMMSDNEDQ VDDSLWDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-171480168ATERF1
3gcc_A1e-171480168ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1512GGRAAGGG
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019151996.11e-106PREDICTED: ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I23e-52ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A1S4D1T39e-61A0A1S4D1T3_TOBAC; ethylene-responsive transcription factor ERF021-like
TrEMBLA0A1U7UNP09e-61A0A1U7UNP0_NICSY; ethylene-responsive transcription factor ERF021-like
STRINGXP_009757757.11e-61(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-45ERF family protein