PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000881.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 371aa    MW: 40375.5 Da    PI: 7.2191
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000881.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.53.6e-062693071154
                              HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Itr_sc000881.1_g00001.1 269 VRKEKMGDRITALQQLISPF-----GKTDTASVLSEAIEYIKFL 307
                              5778999***********98.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.5258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.63E-7268311No hitNo description
SuperFamilySSF474591.11E-11268321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-9268316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.006269313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MAEEFQVGGG NWWESSSSSR LNHHQRFESS SGSSSSSTAA ITSNQNDVSS FIGCWPTQPK  60
SSLDSVSAAG AGDAALLSDH GFNITGLGLS PQPTIPCWNN NNPSFFSNAN AGFQQDCSSY  120
DYDKQMNRLS LDQPQPTAIS SDLDRTASAV LQPHQSSPIN FSYDNNISQN YGMKPSGADI  180
TTSPTWSKFP QFLRPKHPQF SNNTTFWNAA INDDAHFTLF PVDEKPKNIS AGARDSSTVA  240
KKTAGSTETS SKRPRDQNDT ATPMPAFKVR KEKMGDRITA LQQLISPFGK TDTASVLSEA  300
IEYIKFLHDQ VNVLSTPYLK SGASMRHQLN FEKSKNPETA SGQDLRSRGL CLVPISSTTF  360
PLTPTFGGCF R
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1720655e-42GU172065.1 Ipomoea batatas microsatellite Stv_Ipb_2047 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019196951.10.0PREDICTED: transcription factor bHLH123-like isoform X3
TrEMBLA0A314UY344e-83A0A314UY34_PRUYE; Transcription factor bHLH123
STRINGXP_008226756.13e-82(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8602486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-51bHLH family protein