PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000810.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 554aa    MW: 58804.1 Da    PI: 6.5402
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000810.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.92.6e-20290363259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE...............EEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk...............versaedpkvveitYegeHnhe 59 
                               Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+               + +++ed +++++tYeg+Hnh+
  Itr_sc000810.1_g00008.1 290 TDGCQWRKYGQKMAKGNPCPRGYYRCTMAtGCPVRKQtvmdnldnvvaidflITHKTEDRTILITTYEGNHNHP 363
                              7***************************99******96655555555544444677899**************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-26274365IPR003657WRKY domain
SuperFamilySSF1182905.75E-20282365IPR003657WRKY domain
PROSITE profilePS5081123.066284365IPR003657WRKY domain
SMARTSM007742.5E-26289364IPR003657WRKY domain
PfamPF031067.6E-23291363IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MANKSGGGGL SFDPDPISAD NNHHFFRQPH SFLTSPMDSP VNNSPHTLQF PVHVPCAADH  60
HNIDRNTIRV SGEVDFFAHK DDRASAAVAT AAADDLDFDV NIGLHLHTTN ATGGRSIVED  120
ALSPNSQDNR AKNEVGVIKA ELDRMNAENQ HLRDMLHQAT NNYSALQTHL TSLMQQQQQQ  180
QNGGGGGLTA PPPPLRPFMG LGAEAAEDAS QSSSEGRSGG EPPRSSPVNN VESVSGENIH  240
SLEKGGSNVK VARTGHGSKS SGNVDQEATE ATIKKARVSV RARSEAAMIT DGCQWRKYGQ  300
KMAKGNPCPR GYYRCTMATG CPVRKQTVMD NLDNVVAIDF LITHKTEDRT ILITTYEGNH  360
NHPLPPAAMA MASTTSSAAR MLLSGSMPSA DGASMAALMN NSNFLARAFL PAGMATISAS  420
APFPTVTLDL TQTQTPNNPF HFPRIPPNHS HNNINNNQAA FSPLFGQPLF NQTKFSGLHL  480
SHDLENQAMH HQQNPAELAD TVNALTSDPN FPAALAAAIA SILGGSSVPD NTAASNAAAL  540
GNDNAGSVTM ETTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-17276367176WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3563193e-32AY356319.1 Solanum tuberosum L381 gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019162876.10.0PREDICTED: WRKY transcription factor 6-like
TrEMBLA0A1S3Y0V21e-168A0A1S3Y0V2_TOBAC; probable WRKY transcription factor 42
TrEMBLA0A1U7YN041e-168A0A1U7YN04_NICSY; probable WRKY transcription factor 42
STRINGXP_009804478.11e-168(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9452492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.15e-78WRKY family protein