PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000807.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 295aa    MW: 33240.9 Da    PI: 6.8015
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000807.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.11.3e-1784137356
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa+ k
  Itr_sc000807.1_g00004.1  84 KKRRLSLEQVKALEKSFEVGNKLEPERKMQLARALGLQPRQIAIWFQNRRARSK 137
                              4558999*********************************************99 PP
2HD-ZIP_I/II128.13.7e-4183174192
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              ekkrrls eqvk+LE+sFe  +kLeperK++lar+Lglqprq+a+WFqnrRAR ktkqlEkdye Lkr+++al+++n++L++++++
  Itr_sc000807.1_g00004.1  83 EKKRRLSLEQVKALEKSFEVGNKLEPERKMQLARALGLQPRQIAIWFQNRRARSKTKQLEKDYELLKRQFEALSADNDALKSQNKK 168
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreelk 92 
                              L++el+
  Itr_sc000807.1_g00004.1 169 LHSELQ 174
                              **9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-1968141IPR009057Homeodomain-like
PROSITE profilePS5007117.05479139IPR001356Homeobox domain
SMARTSM003893.6E-1882143IPR001356Homeobox domain
PfamPF000468.3E-1584137IPR001356Homeobox domain
CDDcd000861.49E-1684140No hitNo description
Gene3DG3DSA:1.10.10.604.4E-1886146IPR009057Homeodomain-like
PRINTSPR000311.2E-5110119IPR000047Helix-turn-helix motif
PROSITE patternPS000270114137IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5119135IPR000047Helix-turn-helix motif
CDDcd146860.00321132174No hitNo description
PfamPF021831.9E-13139175IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MAAFVPPLPP PPETSITFQN PEEENHFSHH HHHDFNGAAN VSTLLMRRSV SFTGLERPWE  60
NQHHHHHQVD DDTSDDGCSQ LGEKKRRLSL EQVKALEKSF EVGNKLEPER KMQLARALGL  120
QPRQIAIWFQ NRRARSKTKQ LEKDYELLKR QFEALSADND ALKSQNKKLH SELQLMALRS  180
RESKGSGPGS AMIINLNKET EGSWNNNNNN NVSENNSIID VNLGSATTTA DSPLYSNKHH  240
HVLPPSSIAQ TNLPPHHHVQ DEGYCNMFGS AMDEQAEFLA MAPASTTFPL SFSFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131139RRARSKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019157015.11e-154PREDICTED: homeobox-leucine zipper protein ATHB-23-like isoform X1
SwissprotQ8LC033e-58ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A2G2XIA58e-90A0A2G2XIA5_CAPBA; Uncharacterized protein
STRINGXP_009624441.12e-90(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.12e-54HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]