PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000760.1_g00010.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 400aa    MW: 43474.8 Da    PI: 6.638
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000760.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.3e-19219267355
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+g
  Itr_sc000760.1_g00010.1 219 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAFAYDTAAYMLRG 267
                              8******9.**********955...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.86E-30217277No hitNo description
SMARTSM003804.1E-34218281IPR001471AP2/ERF domain
PROSITE profilePS5103222.418218275IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-31218276IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-22218276IPR016177DNA-binding domain
PfamPF008472.2E-12219267IPR001471AP2/ERF domain
PRINTSPR003671.3E-10219230IPR001471AP2/ERF domain
PRINTSPR003671.3E-10241257IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MAASGSPFSG VFCSPNETAY SSPERFVSSS DSNSSTDEAS NNFSDFATIS DQVAAMNEHD  60
HTRSFPHGGL GLSFSDQAAA GIPLNFLESF PSSVTNAPSS SSLSQSNFPN LGLFLQQPSV  120
VETPKKPSSS PSSSFTNFNN PSSSSSSSSY TNFNNFLFPV SQLRPSAESW VRMNQTLTTY  180
SSSSKGFSDF WLSNTRTQPM KHTGRRTTAE TASPPGKLFR GVRQRHWGKW VAEIRLPRNR  240
TRVWLGTFDT AEEAAFAYDT AAYMLRGDYA HLNFPDLKHR LRDNCLNGNT AALLEAKLRS  300
ISQGTAAGAT KKANTNTNNN NNDEKMIKDS PANVKPLLVN ESSSVVTWTQ NPVTPAGEIA  360
AEKKKEEAAA PPENEGGFQL SRMPSLDMDT IWAELLVSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-19216275363ATERF1
3gcc_A7e-19216275363ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019180338.10.0PREDICTED: ethylene-responsive transcription factor ERF062-like
TrEMBLA0A2C9UDB95e-98A0A2C9UDB9_MANES; Uncharacterized protein
STRINGcassava4.1_023072m9e-99(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA109211825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.19e-45ERF family protein