PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000745.1_g00016.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 475aa    MW: 51357 Da    PI: 9.692
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000745.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-055981123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             + C++C+k F r  nL+ H r H
  Itr_sc000745.1_g00016.1 59 FICEICNKGFQRDQNLQLHRRGH 81
                             89*******************88 PP
2zf-C2H212.20.00055136158123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC +C+k +  +s+ k H +t+
  Itr_sc000745.1_g00016.1 136 WKCDKCSKKYAVQSDWKAHSKTC 158
                              58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.65E-75881No hitNo description
Gene3DG3DSA:3.30.160.601.2E-55881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121715.6E-55981IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8455981IPR007087Zinc finger, C2H2
SMARTSM003550.0225981IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM00355120101131IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-4124157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.65E-7131156No hitNo description
SMARTSM00355150136156IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010075Biological Processregulation of meristem growth
GO:0045604Biological Processregulation of epidermal cell differentiation
GO:0048364Biological Processroot development
GO:0051302Biological Processregulation of cell division
GO:0003676Molecular Functionnucleic acid binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MMSGDVFSIP SSLKPTPPPQ DPNPNPKPNP SSKKKRNLPD PDAEVIALSP KTLMATNRFI  60
CEICNKGFQR DQNLQLHRRG HNLPWKLKQR PKTEQVKRKV YICPEKTCVH HDASRALGDL  120
TGIKKHFSRK HGEKKWKCDK CSKKYAVQSD WKAHSKTCGT REYKCDCGTL FSRKDSFITH  180
RAFCDALAEE SARITSVAAN TLNFRNNNDS LMNPPHGLSS GAGIPQIPAA FQQSFQQKPR  240
LSLWLDQAAA AAGNSHHHLQ MPANSAGLFG GSGSSLPEIL QMGNSPMMYG SSPMESFGTS  300
NLSLSPLAPP QGLQDQEGMG MSKAETLSSM YSDNSLQTST KSSAGAAAMS ATALLQKAAQ  360
MGSTKSSAPT AFFGNSFGLM TSSSSSSNNR SELQHMMSQN NNGFDIAAAE NSSCLMQRQQ  420
GVSLNGVNVN AHHLTRDFLG MGSEDGRPFL AEELAKFASS MGSAAMGLSH FSIGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-38132200371Zinc finger protein JACKDAW
5b3h_F2e-38132200371Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00485DAPTransfer from AT5G03150Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019191343.10.0PREDICTED: zinc finger protein JACKDAW isoform X2
TrEMBLA0A484NNL81e-177A0A484NNL8_9ASTE; Uncharacterized protein
STRINGcassava4.1_032876m1e-176(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-100C2H2-like zinc finger protein