PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000723.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 336aa MW: 37232.2 Da PI: 6.952

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000723.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.7	2.3e-32	223	278	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 kpr++W+peLH+rFv+a+++LGG++ AtPk+i+e+m+v+gLt+++vkSHLQkYRl+ Itr_sc000723.1_g00001.1 223 KPRRCWSPELHQRFVDALDKLGGAQAATPKQIREIMNVDGLTNDEVKSHLQKYRLH 278 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-30	220	282	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.342	220	280	IPR017930	Myb domain
SuperFamily	SSF46689	3.94E-18	221	281	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-26	223	278	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-7	225	276	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MAQDFMSERN IDLNCEFVVP KSVSIAFAEI SAIDDPSQKL LKLYSLLQAL EEEAKKIYVI 60 RREVPYATSL LTDEIETVRE EYLKLKGKEK LPALASVEVE EFVLLKGSSN GDRGTTRSND 120 QGEKMNWMSS TGLWNHPVTS SNSDSKKPSN QLFPTRLGCV NKSIQLFVPY KTMTAEEVAA 180 LKADALPVPA LSLSPPSVPQ SVVYKSSYHS HSSKTLNKQE QRKPRRCWSP ELHQRFVDAL 240 DKLGGAQAAT PKQIREIMNV DGLTNDEVKS HLQKYRLHVR RLTASPPPST STGAHSSLPE 300 GPLHLGIPAT CREVSVTVTG LNAVEESDEE ESVRGF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-15	223	276	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-15	223	276	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-15	223	276	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-15	223	276	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-15	223	276	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-15	223	276	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-15	223	276	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-15	223	276	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-15	223	276	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-15	223	276	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-15	223	276	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-15	223	276	2	55	Protein PHOSPHATE STARVATION RESPONSE 1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019176330.1	1e-133	PREDICTED: myb family transcription factor EFM-like
Refseq	XP_019176331.1	1e-133	PREDICTED: myb family transcription factor EFM-like
Refseq	XP_019182597.1	1e-133	PREDICTED: myb family transcription factor EFM-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8497	22	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	6e-33	G2-like family protein