PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ERF

Protein Properties

Length: 136aa MW: 15105.8 Da PI: 8.884

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000697.1_g00019.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	63.7	3.9e-20	21	72	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp+ +g +r +lg+++++e+Aa+a+++a+ kl+g+ Itr_sc000697.1_g00019.1 21 KYRGVRRRP-WGKYAAEIRDPTRQG--ARQWLGTYDSPEDAARAYDRAAFKLRGH 72 8******.******96544..************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	24.381	21	79	IPR001471	AP2/ERF domain
Pfam	PF00847	4.6E-14	21	72	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.3E-30	21	81	IPR001471	AP2/ERF domain
CDD	cd00018	2.69E-19	21	80	No hit	No description
SuperFamily	SSF54171	5.95E-24	21	80	IPR016177	DNA-binding domain
SMART	SM00380	1.4E-36	21	85	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.7E-13	22	33	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.7E-13	61	81	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MEGSSSKGKA IQVGKGKEEV KYRGVRRRPW GKYAAEIRDP TRQGARQWLG TYDSPEDAAR 60 AYDRAAFKLR GHLAILNFPN EYYSQLPNPP CYYPSLTRPG GGSDKGGGGS PTGKSKEVFE 120 IEYEDGLMER LLEGDD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-28	14	82	7	75	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019191293.1	2e-74	PREDICTED: ethylene-responsive transcription factor ERF098-like
Swissprot	Q9LTC5	1e-36	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A1S3XM45	2e-52	A0A1S3XM45_TOBAC; ethylene-responsive transcription factor ERF098-like
STRING	XP_009790228.1	1e-51	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	2e-37	ERF family protein

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]