PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000685.1_g00007.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 530aa MW: 57108.6 Da PI: 5.1278

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000685.1_g00007.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.1	6.3e-08	347	404	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC.......TTS-.STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkas....kapskK.lsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + ++++ Ka +L + ++Y++sLq Itr_sc000685.1_g00007.1 347 NSHSLAERVRREKISQRMKLLQDLVPGCNkaslFTSCPSvTGKAVMLDEIINYVQSLQ 404 58***********************877998777888789************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.56E-9	342	408	No hit	No description
SuperFamily	SSF47459	4.19E-14	344	421	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.951	344	403	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.5E-14	345	416	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.7E-5	347	404	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-9	350	409	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence Send to blast
MDMSGKDDTE TAKRNEDALN FHSDNMPSDW QLNGANLANV SMGVIPNSNP MTDSFWAINS 60 VNLGYRCDAN VLPGVSGSNL LGSGTLGFEP ARGAADRNVG MFGTQPNAML KGSMFLPTPS 120 GMLPQFPGDS DFIERAARFS CFSGGNLCDP INPFSTTESM NPYAKGVMPT QKPQEGFVGN 180 ELKSAPVMQY QDHEMTNVAE SSKEGSLPID GAAEGSRARN GTKNENTFEA KQCVEGSGNE 240 SDEPECSSPG DQDLSEGAGR ESPATGLASK KRKRGGRQAD LDKTKGTPPR LVEATNDQTA 300 IQQDRDQNLI SNASKQGGKN GKQGTQASDS PKEEYIHVRA RRGQATNSHS LAERVRREKI 360 SQRMKLLQDL VPGCNKASLF TSCPSVTGKA VMLDEIINYV QSLQRQVEFL SMKLSTVIPR 420 LDFNIDGLLA KDILQSQTGP SSSLAFPPDI TMPFPPINPP QPSLLQAGLP GYGNPINVLQ 480 RTINSEKATV NVPSVWDNEL HNVFQMGFKP NAPLNSQDHS SLPPQTNSES

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence Send to blast

MDMSGKDDTE TAKRNEDALN FHSDNMPSDW QLNGANLANV SMGVIPNSNP MTDSFWAINS  60
VNLGYRCDAN VLPGVSGSNL LGSGTLGFEP ARGAADRNVG MFGTQPNAML KGSMFLPTPS  120
GMLPQFPGDS DFIERAARFS CFSGGNLCDP INPFSTTESM NPYAKGVMPT QKPQEGFVGN  180
ELKSAPVMQY QDHEMTNVAE SSKEGSLPID GAAEGSRARN GTKNENTFEA KQCVEGSGNE  240
SDEPECSSPG DQDLSEGAGR ESPATGLASK KRKRGGRQAD LDKTKGTPPR LVEATNDQTA  300
IQQDRDQNLI SNASKQGGKN GKQGTQASDS PKEEYIHVRA RRGQATNSHS LAERVRREKI  360
SQRMKLLQDL VPGCNKASLF TSCPSVTGKA VMLDEIINYV QSLQRQVEFL SMKLSTVIPR  420
LDFNIDGLLA KDILQSQTGP SSSLAFPPDI TMPFPPINPP QPSLLQAGLP GYGNPINVLQ  480
RTINSEKATV NVPSVWDNEL HNVFQMGFKP NAPLNSQDHS SLPPQTNSES

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019180750.1	0.0	PREDICTED: transcription factor bHLH49-like
TrEMBL	A0A314KMY7	1e-178	A0A314KMY7_NICAT; Transcription factor bhlh49
STRING	XP_009776786.1	1e-178	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2871	21	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	2e-85	bHLH family protein