PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000628.1_g00006.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 627aa MW: 67105.9 Da PI: 8.4264

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000628.1_g00006.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.4	1.1e-15	445	496	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Itr_sc000628.1_g00006.1 445 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDVAAIKFRG 496 57**************988532...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	0.0047	377	416	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.2E-6	383	411	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	8.834	383	410	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.81E-6	383	412	IPR016177	DNA-binding domain
CDD	cd00018	8.78E-11	445	506	No hit	No description
SuperFamily	SSF54171	7.19E-18	445	506	IPR016177	DNA-binding domain
Pfam	PF00847	1.2E-10	445	496	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.1E-18	446	505	IPR001471	AP2/ERF domain
SMART	SM00380	7.1E-32	446	510	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.216	446	504	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence Send to blast
MAPANNWLSF SLSSMGMLSS SASAASSQLR HEPGAVKINA PFAASDSPHY YFADHIYGGN 60 VGRRQGRWNG MEGWTDGKAQ MMYGEDGNVE AQIHHLPPPP QPQQKQLEDF LGGDTVAAAL 120 ARYSNSRTET QDSSLTHVSA AAATAAYFNN RENLQAIPGI QAFTTNSGGS DVDDSASVPR 180 TQPIAAAADF TGNSIAAVTA LPYSQRPTGA LSLAVNPQTA EPAIVPGDSD TAKKTPDTFG 240 QRTSIYRGVT SMNSKHKKWV SMAADTAGQE GTKRIYGITA VDERVKPEKG VKMGRQFPSW 300 FLGHLSFVVF CNSSDSIIKK MRDGVPGWGK VTSPVAIIGS KAVLRVLFAV SNGCFALFCT 360 KLDGVFASAA AAAIQIVTFQ CGYDKEDKAA RAYDLAALKY WGATATTNFP ISNYNNELED 420 MKNMTKQEFI ASLRRKSSGF SRGASIYRGV TRHHQQGRWQ ARIGRVAGNK DLYLGTFATE 480 EEAAEAYDVA AIKFRGMSAV TNFEMSRYDV DTILRNALPI GGAAKRLKLS LEPEQTSPAL 540 SGSSSHPSQG SSNSNSSSIN FGAIPPVSAI PCGVSFDSSA SLYHHPTLFH HLHSGGNAGG 600 SDLSGDISNI PFQTTPTEFF VWSHPSY

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence Send to blast

MAPANNWLSF SLSSMGMLSS SASAASSQLR HEPGAVKINA PFAASDSPHY YFADHIYGGN  60
VGRRQGRWNG MEGWTDGKAQ MMYGEDGNVE AQIHHLPPPP QPQQKQLEDF LGGDTVAAAL  120
ARYSNSRTET QDSSLTHVSA AAATAAYFNN RENLQAIPGI QAFTTNSGGS DVDDSASVPR  180
TQPIAAAADF TGNSIAAVTA LPYSQRPTGA LSLAVNPQTA EPAIVPGDSD TAKKTPDTFG  240
QRTSIYRGVT SMNSKHKKWV SMAADTAGQE GTKRIYGITA VDERVKPEKG VKMGRQFPSW  300
FLGHLSFVVF CNSSDSIIKK MRDGVPGWGK VTSPVAIIGS KAVLRVLFAV SNGCFALFCT  360
KLDGVFASAA AAAIQIVTFQ CGYDKEDKAA RAYDLAALKY WGATATTNFP ISNYNNELED  420
MKNMTKQEFI ASLRRKSSGF SRGASIYRGV TRHHQQGRWQ ARIGRVAGNK DLYLGTFATE  480
EEAAEAYDVA AIKFRGMSAV TNFEMSRYDV DTILRNALPI GGAAKRLKLS LEPEQTSPAL  540
SGSSSHPSQG SSNSNSSSIN FGAIPPVSAI PCGVSFDSSA SLYHHPTLFH HLHSGGNAGG  600
SDLSGDISNI PFQTTPTEFF VWSHPSY

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019182978.1	1e-127	PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X1
Refseq	XP_019182979.1	1e-127	PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X2
Swissprot	Q52QU2	9e-83	AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2580	24	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10510.2	4e-80	AINTEGUMENTA-like 6

Publications ? help Back to Top
Krizek BA Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers. BMC Res Notes, 2015. 8: p. 556 [PMID:26459062] Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis. Plant Physiol., 2016. 170(1): p. 283-93 [PMID:26537561] Krizek BA, et al. RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways. Plant Physiol., 2016. 171(3): p. 2069-84 [PMID:27208279] Du Y,Scheres B PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714 [PMID:29078398]