PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000585.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 353aa MW: 39250.5 Da PI: 8.7562

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000585.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.2	1e-18	47	138	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekk....rtsessstc 79 +W+++e+ aLi+a+r+++ +lrrg+l++++W+ev++ + ++++qC++k+e+l+kry+++ +++ r+ + s++ Itr_sc000585.1_g00002.1 47 CWSHEETIALIDAYRDKWYSLRRGNLRANHWQEVADDVavrCPVDSPKTAVQCRHKMEKLRKRYRAEIQRAAPyggvRSHRYCSSW 132 8***********************************7555556799***************998887541111234444556 PP trihelix 80 pyfdql 85 ++f+ + Itr_sc000585.1_g00002.1 133 VLFKLM 138 666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.0E-19	46	141	No hit	No description
PROSITE profile	PS50090	6.11	48	107	IPR017877	Myb-like domain
SMART	SM00595	1.6E-9	55	146	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MAAASSSPSN QDLSATPPEN PLSIVTVAAA AGSGAGAASS RRLPPPCWSH EETIALIDAY 60 RDKWYSLRRG NLRANHWQEV ADDVAVRCPV DSPKTAVQCR HKMEKLRKRY RAEIQRAAPY 120 GGVRSHRYCS SWVLFKLMDA MERGTNAAAA ASPPPDEEEL EDDAEDIKQN SVKHIGDIYS 180 QNNLNSNKRS SFQGSMTNGG TGVRIRIPTL PMAKPYSKFD EILTQNPNPN PNTSYGSSRM 240 LKGDCFGKKS ADLGKRVSGE EEVGEKRKAD PIAEMVTAIK ALGDGFLKME RMKMELAREL 300 EEMKMEMEMK RTEMILESQQ RIVEAFANAL TEKNNNNKKT KRMPTPECQM PHS

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MAAASSSPSN QDLSATPPEN PLSIVTVAAA AGSGAGAASS RRLPPPCWSH EETIALIDAY  60
RDKWYSLRRG NLRANHWQEV ADDVAVRCPV DSPKTAVQCR HKMEKLRKRY RAEIQRAAPY  120
GGVRSHRYCS SWVLFKLMDA MERGTNAAAA ASPPPDEEEL EDDAEDIKQN SVKHIGDIYS  180
QNNLNSNKRS SFQGSMTNGG TGVRIRIPTL PMAKPYSKFD EILTQNPNPN PNTSYGSSRM  240
LKGDCFGKKS ADLGKRVSGE EEVGEKRKAD PIAEMVTAIK ALGDGFLKME RMKMELAREL  300
EEMKMEMEMK RTEMILESQQ RIVEAFANAL TEKNNNNKKT KRMPTPECQM PHS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019161074.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A328DXR9	1e-171	A0A328DXR9_9ASTE; Uncharacterized protein
TrEMBL	A0A484MB70	1e-171	A0A484MB70_9ASTE; Uncharacterized protein
STRING	PGSC0003DMT400004269	1e-152	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8028	23	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	3e-54	Trihelix family protein