PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000579.1_g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | G2-like | ||||||||
Protein Properties | Length: 291aa MW: 31459.2 Da PI: 7.1334 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.8 | 1.6e-30 | 101 | 154 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Itr_sc000579.1_g00012.1 101 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 154 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.69E-20 | 98 | 158 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.059 | 98 | 157 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-30 | 100 | 159 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-24 | 102 | 154 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-7 | 104 | 153 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MREEDSNRFA FAKWEDELPS PEELMPLSQT LISPDLALAF DIRNPGNTAA VPPQSHHHAP 60 APPVSAVHTP SSQPNSSAEF DSGEMGGGGA AGDEPARTLK RPRLVWTPQL HKRFVDAVAH 120 LGIKNAVPKT IMQLMSVDGL TRENVASHLQ KYRLYLKRMQ GLSNGGSGAG NNSGAGAGDP 180 ATDHLFASSP VPAHFLHPGR PNSEHFMPFV NIPAMQHHQQ MAAVLHPPYR HFGSPPNAQF 240 ENPFVSRQSQ QRMGTPVHNR SPVAPPYAVD DVESAAANAR KVLTLFPTGD D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 3e-32 | 101 | 157 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 8e-56 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019162796.1 | 1e-156 | PREDICTED: transcription factor PCL1-like | ||||
Swissprot | O22210 | 1e-58 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | A0A1S4AUN4 | 1e-129 | A0A1S4AUN4_TOBAC; transcription factor PCL1-like | ||||
TrEMBL | A0A1U7XDB2 | 1e-129 | A0A1U7XDB2_NICSY; transcription factor PCL1-like | ||||
STRING | XP_009790047.1 | 1e-130 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2432 | 23 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10760.1 | 1e-85 | G2-like family protein |
Publications ? help Back to Top | |||
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