PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000567.1_g00026.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 240aa    MW: 25920.5 Da    PI: 8.8366
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000567.1_g00026.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51.1e-202473255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g
  Itr_sc000567.1_g00026.1 24 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAARQFRG 73
                             69*******.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-142473IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-222481IPR016177DNA-binding domain
SMARTSM003801.0E-382487IPR001471AP2/ERF domain
CDDcd000188.32E-182481No hitNo description
PROSITE profilePS5103223.4722481IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-322481IPR001471AP2/ERF domain
PRINTSPR003674.9E-112536IPR001471AP2/ERF domain
PRINTSPR003674.9E-114763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MAVKGGGVKD GSSGRHVSGV KEVHFRGVRK RPWGRYAAEI RDPGKKSRVW LGTFDTAEEA  60
ARAYDAAARQ FRGPKAKTNF ALPSENHSPS HSSTVESSGS EGGAHAPREL DLTRRLGVGE  120
VGSVNHGLPF ARKPQPAVAI LPNGQPVLLF DTVWRPGVVT QQQAYRFEPV PVLSKCGGAH  180
SDSDSSSVVD ESHFDAGLAK KGLNLDLNLA PPXXXXXXXX XXLNEEKIDF CETNYSFSCI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-202482261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-202482564ATERF1
3gcc_A8e-202482564ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019194110.11e-111PREDICTED: ethylene-responsive transcription factor 4-like
SwissprotQ9LW491e-74ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A314L7G43e-73A0A314L7G4_NICAT; Ethylene-responsive transcription factor 4
STRINGXP_009772525.15e-73(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-27erf domain protein 9