PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000552.1_g00020.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 502aa    MW: 55171.3 Da    PI: 6.0025
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000552.1_g00020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.4e-13356402455
                              HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Itr_sc000552.1_g00020.1 356 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 402
                              799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.2E-4249225IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.806352401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-14355406No hitNo description
SuperFamilySSF474591.31E-18355422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-17356413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-10356402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-16358407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.872437502IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MGDKFCVDDS DRALVEGVLG RHAVDFFTWS ASNNVLSDFV ASSGCLGVQR ELCKIVEESD  60
WAYAIYWQVA KSKSGKSALI WGDGHCSELN RRLSEEMNVN QTLVDGDKKK QVLRKICGCF  120
GGSEEDNVGN KLDFVSDMEM FYLTSMYYVF PFDVPSSPSQ SFNSSRTIWA ADTRSCSEHY  180
QSRSHLAKLA KFETLVFIPL KSGVVELGST KAIPEDQNVI KMAQKIVVVS AHAPAKAIPK  240
IFGQELSLGG AKSGPISISF APKLEEELGG HPSDSYDINA LGSSQVYGNS SNGYRSDDGD  300
GKLLPQVNQV MVGGLSSQAL VSGFEQASED AMLQPDVQKP RKRGRKPANG REEPLNHVEA  360
ERQRREKLNQ RFYALRAVVP NISKMDKASL LGDAIAYITD LQARVRIMEA EREVPTNQPK  420
PLSVSDIEFH QRADDAVIRV GCPLDTHPIS RVIKAFQEHQ VTAQESSMSI SENGEVIHTF  480
SIQTQGAPAE EMKEKLAASL AK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-29350418270Transcription factor MYC2
5gnj_B5e-29350418270Transcription factor MYC2
5gnj_E5e-29350418270Transcription factor MYC2
5gnj_F5e-29350418270Transcription factor MYC2
5gnj_G5e-29350418270Transcription factor MYC2
5gnj_I5e-29350418270Transcription factor MYC2
5gnj_M5e-29350418270Transcription factor MYC2
5gnj_N5e-29350418270Transcription factor MYC2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165044.10.0PREDICTED: transcription factor bHLH3-like
SwissprotA0A3Q7H2160.0MTB3_SOLLC; Transcription factor MTB3
TrEMBLM1BS130.0M1BS13_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000516720.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66692433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-141bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]