PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000552.1_g00011.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 400aa    MW: 44262 Da    PI: 10.0517
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000552.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.5e-202575155
                      AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             s+++GVr ++ +gr++AeIrd ++    ++r +lg+f+taeeAa+a+++a+++l+g
  Itr_sc000552.1_g00011.1 25 SHFRGVRKRP-WGRYAAEIRDpWK----KTRRWLGTFDTAEEAARAYDQAARSLRG 75
                             78********.**********883....5999**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-222584IPR016177DNA-binding domain
CDDcd000186.94E-302585No hitNo description
PfamPF008471.2E-122575IPR001471AP2/ERF domain
PROSITE profilePS5103222.4582683IPR001471AP2/ERF domain
SMARTSM003804.7E-362689IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-302683IPR001471AP2/ERF domain
PRINTSPR003678.3E-102738IPR001471AP2/ERF domain
PRINTSPR003678.3E-104965IPR001471AP2/ERF domain
PfamPF032089.1E-45232373IPR004895Prenylated rab acceptor PRA1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MVGGNTTERG TVEGVSPAGR SVKESHFRGV RKRPWGRYAA EIRDPWKKTR RWLGTFDTAE  60
EAARAYDQAA RSLRGPKAKT NFDYLDALSC FSPVHAEPAA PVVPDFISSA TVAQWLPPPW  120
LTSAAEDTPP RSEYTGYKLE TVVGVVTSER EKQLRTEKKP LFLVSLSSLS RIHLPPAYSE  180
TLTTVTSGTF VAQLHRAEAS FHLPAMQSGY HSFPASGASP ILSPTKSRTQ SSFAPLRPWR  240
QLIGNLSSYS RPLSLPDLAA RLRRNLYYFR VNYAVVMLLI LFLSLIWHPV SMIVFLVVFA  300
AWLSLYFFRK EPLVIFNQTF EDRAVLSVLS IVTVVSLGMT GVSLNVFLSV LIGAAVVTLH  360
AAFRATEDLY LEEEEAAGGA MLPSFFGTTS RVVSTRVVLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-221884473Ethylene-responsive transcription factor ERF096
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.15e-22ethylene responsive element binding factor 3