PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000403.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | SBP | ||||||||
Protein Properties | Length: 254aa MW: 28007.4 Da PI: 8.0711 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.5 | 5.8e-41 | 130 | 206 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqve C adl+ ak+yh+rhkvCevh+kap+vl++g+ qrfCqqCsrfhe+sefDe+krsCrrrLa+hnerrrk++ Itr_sc000403.1_g00003.1 130 CCQVEMCGADLTFAKTYHKRHKVCEVHAKAPAVLLNGVDQRFCQQCSRFHEVSEFDEAKRSCRRRLAGHNERRRKAS 206 6**************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 8.8E-33 | 125 | 192 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.137 | 128 | 205 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.06E-37 | 130 | 208 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.4E-32 | 131 | 204 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MLTNNNIGTV YKRYIYRQSG DSWVGCRVLV AVVVLTNFIS PLLSQHTSSR PIDHAFPSME 60 AHNHGGRLAS STTVKAKREL EGEDEDEEEE EDEEDECDLR KKKIMDVGLG KKGPSSGGVV 120 AGGGVTAASC CQVEMCGADL TFAKTYHKRH KVCEVHAKAP AVLLNGVDQR FCQQCSRFHE 180 VSEFDEAKRS CRRRLAGHNE RRRKASCENR GGGEGSSRRR VEPPLKESKQ CSRGGGQLII 240 SAAGTSSYEN FHIH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-36 | 124 | 204 | 4 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019193671.1 | 1e-84 | PREDICTED: squamosa promoter-binding-like protein 3 | ||||
TrEMBL | A0A1B3IL64 | 6e-47 | A0A1B3IL64_POPTO; Squamosa promoter-binding protein 20 | ||||
STRING | XP_010260271.1 | 2e-47 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA749 | 24 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 6e-39 | squamosa promoter binding protein-like 4 |