PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000368.1_g00013.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 447aa MW: 50145.8 Da PI: 8.5465

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000368.1_g00013.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.2	4.4e-06	23	43	7	27
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 +ff+ +G+C+ Gd+C F Hgp Itr_sc000368.1_g00013.1 23 CFFYNNGFCNKGDKCVFLHGP 43 578888*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	1.06E-5	17	42	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.037	17	44	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.4E-5	18	43	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.9E-6	22	45	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MSYESTTTYH QPVVQVNKTN VPCFFYNNGF CNKGDKCVFL HGPDDGVPTL QSSKVASRVP 60 DGLAVEKKKC LGSEKGSAQV ETHPSSFKTS LKISANAKVM TEVNLQPATN NLTDGNTSPG 120 ISGSQSEEAV AVKLISSLPA EGFTEGGSHL ATAWSSDDEM EDNIERGECL ESSPGFDVLV 180 NDRSGELGYE VDHEYSLQND MDGRTLDEQY MGDDSEDNSE YHPVHLDTGI VLDDECTSYL 240 LRKINGHARQ RVKDCILPWK RKNMPTKWAF SAKGNMDLRN HLKGRQTVDR YTLNHYHRRH 300 DSSYFNTPST NRPHCHSTRK RHQRLASKVE SKASGSQSER GSFLNGINHE STLRHSHMSS 360 RRQHFKRIHS KKLPFLSEVS RMGVSKKRES TDKSKLFSAP KTLSQIKEEK RRAKGDWNLG 420 PQLSGTNVED EFQGPKSLAE ILQSKRR

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MSYESTTTYH QPVVQVNKTN VPCFFYNNGF CNKGDKCVFL HGPDDGVPTL QSSKVASRVP  60
DGLAVEKKKC LGSEKGSAQV ETHPSSFKTS LKISANAKVM TEVNLQPATN NLTDGNTSPG  120
ISGSQSEEAV AVKLISSLPA EGFTEGGSHL ATAWSSDDEM EDNIERGECL ESSPGFDVLV  180
NDRSGELGYE VDHEYSLQND MDGRTLDEQY MGDDSEDNSE YHPVHLDTGI VLDDECTSYL  240
LRKINGHARQ RVKDCILPWK RKNMPTKWAF SAKGNMDLRN HLKGRQTVDR YTLNHYHRRH  300
DSSYFNTPST NRPHCHSTRK RHQRLASKVE SKASGSQSER GSFLNGINHE STLRHSHMSS  360
RRQHFKRIHS KKLPFLSEVS RMGVSKKRES TDKSKLFSAP KTLSQIKEEK RRAKGDWNLG  420
PQLSGTNVED EFQGPKSLAE ILQSKRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019191533.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 17-like isoform X2

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11433	9	11