 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Itr_sc000352.1_g00056.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
| Family |
ERF |
| Protein Properties |
Length: 308aa MW: 32451.1 Da PI: 4.4068 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc000352.1_g00056.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 62.3 | 1.1e-19 | 33 | 83 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
++y GVr+++ +gr++AeIrdp++ + r++lg+f+taeeAa a+++a+++++g
Itr_sc000352.1_g00056.1 33 CRYLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAEEAALAYDRAARSMRG 83
6899******.**********933...5*************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009739 | Biological Process | response to gibberellin |
| GO:0010030 | Biological Process | positive regulation of seed germination |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 308 aa
Download sequence Send
to blast |
MDMMTNKSKS SSSGKSKKSA SGGSGQQAEP SGCRYLGVRR RPWGRYAAEI RDPNTKERHW 60
LGTFDTAEEA ALAYDRAARS MRGKSRARTN FVYSDMPPGS SVTSIISPDE PQYAVYNNDF 120
PHFPGGLFSA PAQNVEQHYQ SGNGNHAGAD QFLLFGADQS GGGADLLDIG GINGGCEFFQ 180
DYYCNGNGNG VDESNNAAAM AMAAELPPLP PDITTSCSGG YFGSGFGGEA TSSGDNAAYT 240
TVMDGGVSAS AGWDYYGYGG GGGSTEMAMQ PQAPPEMNYG SSESDGINMF TTNSYSFSTS 300
NNYGGYWL
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gcc_A | 7e-18 | 35 | 91 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
| 5wx9_A | 1e-17 | 21 | 91 | 3 | 71 | Ethylene-responsive transcription factor ERF096 |
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