PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000299.1_g00022.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 539aa    MW: 56874.4 Da    PI: 6.2412
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000299.1_g00022.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27e-09335383355
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Itr_sc000299.1_g00022.1 335 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 383
                              58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-17330400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.46E-11330387No hitNo description
PROSITE profilePS5088815.478332382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-17333400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-6335383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10338388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MDKGGKDEAM AAKRGDDAMS FQSANVSSEW QMNGSNLANT PIGMIPNSNP MVDAFCLNVW  60
DQSASSANLG FCDANVHCNV STSSPFGAGT SGFTAALRGG VDRGVGMAWH PANTMLKTGM  120
LLPTAPAVVP PNLPQFPADS DFLQRAARFS CFSGGNLGDM MNPFESLSPY CRGLTPTQRP  180
QQVFVGNGLK PAPAGEISNG AADGSPLNND SVIEYAVGSR NSAKEGGGAF GNEPNEPECS  240
SRGGLDVSEG AGAESSASKK RKRSGQDAET DQNKGTPPPA EAATDQTDNQ QKGDQNVTAT  300
PSKPGGKGGK QGSQASDNPK EDYIHIRARR GQATNSHSLA ERVRREKISE RMKFLQDLVP  360
GCNKVTGKAV MLDEIINYVQ SLQRQVEFLS MKLATVNPRL EFNIDGLLAK DILQSRAGPS  420
SSLLSFPHDM TMPYPPVHHP PSTLIQAGLP SLGSSADAIR RTINSHLATA SGSFKEPTPQ  480
GVGHGLTLQA SAQQSPSHLV PSMWDDELHN VVQMGFNPSA PLDSQDIGSL PPGHMKSEP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258263KKRKRS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019149814.10.0PREDICTED: transcription factor bHLH49-like isoform X1
TrEMBLA0A314KMY70.0A0A314KMY7_NICAT; Transcription factor bhlh49
STRINGXP_009776786.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28712150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.23e-93bHLH family protein