PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000234.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GRAS | ||||||||
Protein Properties | Length: 433aa MW: 47592.1 Da PI: 4.9937 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 285.6 | 1.4e-87 | 46 | 407 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fs 85 ++lLl+cA a++s+d +laq++++ l++ as++gd++qRl++ f++AL +r ar ++ y ++ + + +++++++l ++ Itr_sc000234.1_g00004.1 46 ERLLLHCASALESNDVTLAQQVMWVLNNVASSTGDANQRLTSWFLRALVSRAARVYPKSYPTCGGGNGA---CGRVMSVTELagYV 128 579***************************************************777777666555554...566666666677** PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakf 168 ++ P+++f++ +aN+aI eav+g+ +vHi+Df++++++QWp+L++aLa+Rpegpp lR+ + + ++ + ++ee+g rLa+f Itr_sc000234.1_g00004.1 129 DLIPWYRFGFCAANSAIIEAVQGCAKVHILDFSVTHCMQWPTLIDALADRPEGPPALRLSVPSWRPPVapwLSLSTEEVGLRLANF 214 ************************************************************98876666788999************ PP GRAS 169 AeelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnses 252 A++ +pf+f+v+ +d++ L + + +Eal+Vn++ l +l+ +r+++L+++k l+P++++v++++ad++++s Itr_sc000234.1_g00004.1 215 AKSRSIPFQFSVI-----ADINNGGLGLFEdaDEALVVNCQNWLRYLP--------CRQTFLDTIKCLNPTLITVIDEDADLDAPS 287 ***********96.....67888888887777***************9........7889************************** PP GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338 + r++++++y + +fdsle+ l+++s++r+ +E+ +g++i+n++ eg +r+er e+ + + r++++GF +vp+se++ k++k Itr_sc000234.1_g00004.1 288 LSSRIVNCFNYLWIIFDSLETFLSKDSQQRAEYEAD-VGQKIENIIGFEGGQRIERLESSTTLSTRMRNSGFLNVPFSEETIKEVK 372 ************************************.************************************************* PP GRAS 339 lllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 +l +++ ++g++ ++++g+lvl+Wk+++ v+++ W Itr_sc000234.1_g00004.1 373 FVLDEHAsGWGMK-KKDDGTLVLTWKGHSSVFATTW 407 *******555544.5789*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 35 | No hit | No description |
PROSITE profile | PS50985 | 42.512 | 19 | 388 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.7E-85 | 46 | 407 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MGQVVRGNPT FQNLATFLNN NPQTSLSSAG AIGGCLLGSL DGACTERLLL HCASALESND 60 VTLAQQVMWV LNNVASSTGD ANQRLTSWFL RALVSRAARV YPKSYPTCGG GNGACGRVMS 120 VTELAGYVDL IPWYRFGFCA ANSAIIEAVQ GCAKVHILDF SVTHCMQWPT LIDALADRPE 180 GPPALRLSVP SWRPPVAPWL SLSTEEVGLR LANFAKSRSI PFQFSVIADI NNGGLGLFED 240 ADEALVVNCQ NWLRYLPCRQ TFLDTIKCLN PTLITVIDED ADLDAPSLSS RIVNCFNYLW 300 IIFDSLETFL SKDSQQRAEY EADVGQKIEN IIGFEGGQRI ERLESSTTLS TRMRNSGFLN 360 VPFSEETIKE VKFVLDEHAS GWGMKKKDDG TLVLTWKGHS SVFATTWVPP PNHHSIHDIS 420 CILESSDQYS IMI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 5e-55 | 39 | 409 | 27 | 420 | Protein SHORT-ROOT |
5b3h_E | 5e-55 | 39 | 409 | 27 | 420 | Protein SHORT-ROOT |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019167744.1 | 0.0 | PREDICTED: scarecrow-like protein 32 | ||||
TrEMBL | F6HIM6 | 0.0 | F6HIM6_VITVI; Uncharacterized protein | ||||
STRING | VIT_12s0059g02770.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10303 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49950.1 | 1e-119 | GRAS family protein |