PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000190.1_g00016.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 399aa    MW: 43975.6 Da    PI: 6.0231
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000190.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH231.4e-07209240436
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapsk 36 
                              +h+ +Er RR++iN ++  L+el+P + +    
  Itr_sc000190.1_g00016.1 209 SHSLAERARREKINARMKLLQELVPGC-NKVES 240
                              8************************97.23334 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.06E-6203296No hitNo description
SuperFamilySSF474595.06E-10203235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.316205291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-11209235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-5209243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-4211297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.06E-10275309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-11275309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MESMELGQTR SVNCGAKPGD IGTEVPQFGD EGFQGLMPVV VSEEAGSSFT ALLELPAKQA  60
VELLVHSSEA EGSPATKLPE IEPQRNYHQG FLPPPIFPSD TALVDRASKF SVFAGNSPET  120
ESIPSNSCSK PHFVKSEPAD SDSNPNSSPS PAVSNPTVNH KSAKRKEREK KIKEPSKKSK  180
KAANNTSEGD GEKLPYVHVR ARRGQATDSH SLAERARREK INARMKLLQE LVPGCNKVES  240
KLSEGILNRS TLQPSFLLGR SFVFASLFYS IMLISGTAMV LDEIINHVQF LQRQVEFLSM  300
RLATVNPRID FNIDALFAAE TDSPVENNCT GMIMPSMWPE GQAIENRPQH QQLWHADGFH  360
QPMWTREENC SFIAPENSLL TYDSTNSGPL LANQLKMEI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019154366.10.0PREDICTED: transcription factor bHLH48-like
SwissprotQ3EAI15e-83BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A328DSL31e-159A0A328DSL3_9ASTE; Uncharacterized protein
STRINGPGSC0003DMT4000211301e-147(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40292342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.14e-73bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]