PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000179.1_g00022.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 360aa MW: 39395.1 Da PI: 8.937

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000179.1_g00022.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.6	3.6e-16	125	170	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L++l+P++ K +Ka++L +A+eY+k+Lq Itr_sc000179.1_g00022.1 125 HNLSEKRRRSRINEKLKALQTLIPNS-----NKTDKASMLDEAIEYLKQLQ 170 9**********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.80E-18	116	174	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.6E-19	117	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.63E-20	117	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.841	120	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-13	125	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.4E-18	126	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MSSFLQNLLH GASTSADGDD GGGLFPRPAT EATDFMGRMR DGASAPAIEP SPSLNFSDPS 60 LFYGAQVKGS AVNAFSSAAI GDFDATGSSK RIEFENDNKG CETSDAPSNR AQPRPSKRSR 120 SAEIHNLSEK RRRSRINEKL KALQTLIPNS NKTDKASMLD EAIEYLKQLQ LQVQMLTMRN 180 GLSLYPGYFQ GSLPSVQLPS SGGEFDKGNA MLNTRGSATT FSGNQEMLAQ TSFQISNQNS 240 TPHQTMENNT TNSENPIALG TSIQNHYGLL NQLASTKGRC TIKIAFRDEL LWEQFITRHL 300 FLVSKEIQCR QCPFAPSSRV PSPYGLPTPR QGSRKCPTLW DNSSSRMDYL IFASSGKLNV

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MSSFLQNLLH GASTSADGDD GGGLFPRPAT EATDFMGRMR DGASAPAIEP SPSLNFSDPS  60
LFYGAQVKGS AVNAFSSAAI GDFDATGSSK RIEFENDNKG CETSDAPSNR AQPRPSKRSR  120
SAEIHNLSEK RRRSRINEKL KALQTLIPNS NKTDKASMLD EAIEYLKQLQ LQVQMLTMRN  180
GLSLYPGYFQ GSLPSVQLPS SGGEFDKGNA MLNTRGSATT FSGNQEMLAQ TSFQISNQNS  240
TPHQTMENNT TNSENPIALG TSIQNHYGLL NQLASTKGRC TIKIAFRDEL LWEQFITRHL  300
FLVSKEIQCR QCPFAPSSRV PSPYGLPTPR QGSRKCPTLW DNSSSRMDYL IFASSGKLNV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019152676.1	0.0	PREDICTED: transcription factor SPATULA-like
Refseq	XP_019152677.1	0.0	PREDICTED: transcription factor SPATULA-like
TrEMBL	A0A484ME17	1e-105	A0A484ME17_9ASTE; Uncharacterized protein
STRING	PGSC0003DMT400020534	8e-89	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7543	23	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	2e-35	bHLH family protein