PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000179.1_g00022.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 360aa    MW: 39395.1 Da    PI: 8.937
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000179.1_g00022.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.6e-16125170555
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              hn  E+rRR+riN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  Itr_sc000179.1_g00022.1 125 HNLSEKRRRSRINEKLKALQTLIPNS-----NKTDKASMLDEAIEYLKQLQ 170
                              9************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.80E-18116174No hitNo description
Gene3DG3DSA:4.10.280.103.6E-19117180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-20117180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.841120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-13125170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-18126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MSSFLQNLLH GASTSADGDD GGGLFPRPAT EATDFMGRMR DGASAPAIEP SPSLNFSDPS  60
LFYGAQVKGS AVNAFSSAAI GDFDATGSSK RIEFENDNKG CETSDAPSNR AQPRPSKRSR  120
SAEIHNLSEK RRRSRINEKL KALQTLIPNS NKTDKASMLD EAIEYLKQLQ LQVQMLTMRN  180
GLSLYPGYFQ GSLPSVQLPS SGGEFDKGNA MLNTRGSATT FSGNQEMLAQ TSFQISNQNS  240
TPHQTMENNT TNSENPIALG TSIQNHYGLL NQLASTKGRC TIKIAFRDEL LWEQFITRHL  300
FLVSKEIQCR QCPFAPSSRV PSPYGLPTPR QGSRKCPTLW DNSSSRMDYL IFASSGKLNV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152676.10.0PREDICTED: transcription factor SPATULA-like
RefseqXP_019152677.10.0PREDICTED: transcription factor SPATULA-like
TrEMBLA0A484ME171e-105A0A484ME17_9ASTE; Uncharacterized protein
STRINGPGSC0003DMT4000205348e-89(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75432328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-35bHLH family protein