PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ERF

Protein Properties

Length: 139aa MW: 15949 Da PI: 10.4909

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000179.1_g00019.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54	4e-17	18	67	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ ++ Aa+a++ a +l+g Itr_sc000179.1_g00019.1 18 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVFYLRG 67 69***99.******9...336***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	21.904	18	75	IPR001471	AP2/ERF domain
SMART	SM00380	2.6E-36	18	81	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	8.5E-21	18	76	IPR016177	DNA-binding domain
PRINTS	PR00367	1.3E-11	19	30	IPR001471	AP2/ERF domain
Pfam	PF00847	1.2E-10	19	67	IPR001471	AP2/ERF domain
CDD	cd00018	3.40E-25	19	76	No hit	No description
Gene3D	G3DSA:3.30.730.10	2.1E-29	19	76	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-11	57	77	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MEEAAEKRKR RQSQAEKPYR GIRMRKWGKW VAEIREPNKR SRIWLGSYSS PVAAARAYDT 60 AVFYLRGPTA RLNFPEFFAH DDRLPDLSAA DIRKKATEVG ARVDALQTAI HAPPKPDRNP 120 AQTRLKPDLN QYPSSDEDN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	1e-14	17	75	4	63	ATERF1
3gcc_A	1e-14	17	75	4	63	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019152321.1	2e-84	PREDICTED: ethylene-responsive transcription factor RAP2-1-like
Swissprot	Q9FH94	3e-47	ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBL	M1ADM5	1e-67	M1ADM5_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400020525	2e-68	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA943	23	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67190.1	1e-49	DREB and EAR motif protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]