PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000167.1_g00008.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SRS

Protein Properties

Length: 389aa MW: 40489.1 Da PI: 7.4316

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000167.1_g00008.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	216	8.3e-67	155	307	5	154
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...kskkqsals 87 ++sCqdCGnqakkdC+h+RCRtCC+srgf+C+thvkstWvpa+krrer + l+ a++++++ ++++++kr+r++ + ++s+l Itr_sc000167.1_g00008.1 155 SISCQDCGNQAKKDCSHMRCRTCCRSRGFQCQTHVKSTWVPASKRRERLSSLQDAQQQQQQIHSRETPKRQRDNddnNPPTSSSLL 240 689*************************************************99999999999999999998332333444445 PP DUF702 88 stklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +t+ ++ + le+ ++P++vs +a f+cvr++svdd+e+++aYqtav+igGhvfkGiLyd+G+e+ Itr_sc000167.1_g00008.1 241 CTSHRLPSTISGLEMGNFPAKVSLNAAFQCVRMRSVDDSEDQYAYQTAVNIGGHVFKGILYDEGPES 307 55555556667788888**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.4E-62	155	306	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.7E-26	157	199	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.8E-24	258	305	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MAGFFSLGGG SGGRGGGGGG GEGGGGGGNS HPHPHHHNHQ NSSSSNAATE ISPETWFLYR 60 NDQEIPAAYK GFELWQEHQP SIRHHQHLNS LQDLYPSSSA VGLGVGPSRN PPGANNNMSS 120 SSPAAADEPS RSAAAAAFVM MRSGAGSGGA GGGISISCQD CGNQAKKDCS HMRCRTCCRS 180 RGFQCQTHVK STWVPASKRR ERLSSLQDAQ QQQQQIHSRE TPKRQRDNDD NNPPTSSSLL 240 CTSHRLPSTI SGLEMGNFPA KVSLNAAFQC VRMRSVDDSE DQYAYQTAVN IGGHVFKGIL 300 YDEGPESQYM TAGESSSGGG SGSAGLHTQH NLLSSGAAAT ATSAATTSAS GGTTAAAEGG 360 QAAFFDPSLY PAPLSTFMAG TQFFPPPRS

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MAGFFSLGGG SGGRGGGGGG GEGGGGGGNS HPHPHHHNHQ NSSSSNAATE ISPETWFLYR  60
NDQEIPAAYK GFELWQEHQP SIRHHQHLNS LQDLYPSSSA VGLGVGPSRN PPGANNNMSS  120
SSPAAADEPS RSAAAAAFVM MRSGAGSGGA GGGISISCQD CGNQAKKDCS HMRCRTCCRS  180
RGFQCQTHVK STWVPASKRR ERLSSLQDAQ QQQQQIHSRE TPKRQRDNDD NNPPTSSSLL  240
CTSHRLPSTI SGLEMGNFPA KVSLNAAFQC VRMRSVDDSE DQYAYQTAVN IGGHVFKGIL  300
YDEGPESQYM TAGESSSGGG SGSAGLHTQH NLLSSGAAAT ATSAATTSAS GGTTAAAEGG  360
QAAFFDPSLY PAPLSTFMAG TQFFPPPRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	11	19	GGRGGGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019172034.1	1e-165	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	K4B6C9	1e-101	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A1U8FN76	1e-117	A0A1U8FN76_CAPAN; protein SHI RELATED SEQUENCE 1-like
TrEMBL	A0A2G2XH16	1e-117	A0A2G2XH16_CAPBA; Uncharacterized protein
STRING	XP_009628752.1	1e-118	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	4e-73	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]