PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000114.1_g00042.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 310aa MW: 34329.8 Da PI: 7.0687

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000114.1_g00042.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.3	1.6e-33	163	220	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYY+Ct+++Cpvkk+vers++dp++v++tYeg+Hnh+ Itr_sc000114.1_g00042.1 163 EDGYRWRKYGQKAVKNSPFPRSYYKCTTQKCPVKKRVERSHQDPTTVITTYEGQHNHH 220 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.2E-35	147	222	IPR003657	WRKY domain
SuperFamily	SSF118290	5.36E-29	155	222	IPR003657	WRKY domain
PROSITE profile	PS50811	32.122	157	222	IPR003657	WRKY domain
SMART	SM00774	7.3E-38	162	221	IPR003657	WRKY domain
Pfam	PF03106	1.4E-26	163	220	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MSENQFYHDH TGFNPLFIGD DGDDHRNPSL YSSNLSHPEF DPSPPFVNYN VVSSSAFPTL 60 LWSSSTRSEV VGPSSSDHHV QECSRKSSVS VGQPPASSSS SEAAGGGGGE EDSSKSGKNL 120 EGVECEDGED KSKKMNKGKK KEEKKQREPR FAFITKSEID NLEDGYRWRK YGQKAVKNSP 180 FPRSYYKCTT QKCPVKKRVE RSHQDPTTVI TTYEGQHNHH CPATLRGNAA AMFSSPPSFF 240 PSSAPPPPPH FPRDLFAPAA PHFPPPIMYD YQQSHGGLIG GHAPPQPQFD YGMFQEMVAS 300 LVQKQEHNNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-28	155	223	10	78	Probable WRKY transcription factor 4
2lex_A	2e-28	155	223	10	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	2e-31	HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBank	HG975524	2e-31	HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019159311.1	1e-136	PREDICTED: probable WRKY transcription factor 71
Swissprot	Q8VWJ2	4e-53	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	A0A1S3ZUL5	8e-77	A0A1S3ZUL5_TOBAC; probable WRKY transcription factor 71
STRING	XP_009615724.1	1e-77	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1485	24	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	4e-43	WRKY DNA-binding protein 71

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]