PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000111.1_g00067.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NF-YB | ||||||||
Protein Properties | Length: 320aa MW: 35583.6 Da PI: 10.041 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 83.4 | 2.8e-26 | 173 | 220 | 2 | 49 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse 49 reqdrflPian+srimkk+lPa +ki+kdaketvqecvsefisfvtse Itr_sc000111.1_g00067.1 173 REQDRFLPIANISRIMKKALPASGKIAKDAKETVQECVSEFISFVTSE 220 89*********************************************9 PP | |||||||
2 | NF-YB | 75.1 | 1e-23 | 242 | 287 | 50 | 95 |
NF-YB 50 asdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 asdkcq+ekrktingddllwa+atlGfedy++plkvyl++yre ++ Itr_sc000111.1_g00067.1 242 ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKVYLTRYREGDT 287 9*****************************************9665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.3E-46 | 169 | 299 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.14E-31 | 175 | 300 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.5E-15 | 178 | 220 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 7.0E-17 | 206 | 224 | No hit | No description |
PRINTS | PR00615 | 7.0E-17 | 246 | 264 | No hit | No description |
PRINTS | PR00615 | 7.0E-17 | 265 | 283 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MLKAQRRSGQ IFKALISPLR LASKCRNRSL EDLPRSTLCL TDLEFHVKRA RKVRENLPGM 60 DRVVESWSEC CTLESGEAKS VNHGDGKAEV RRAGEGVRVE RHRLEKSSPL CALFQRPISS 120 PRLDSPRAQI QILNFSDRVH LAAVMADGQH PASPGGGSHD SGEHSPGPRS NIREQDRFLP 180 IANISRIMKK ALPASGKIAK DAKETVQECV SEFISFVTSE YGSPRKLFSS LLFSLKVMRI 240 WASDKCQKEK RKTINGDDLL WAMATLGFED YIDPLKVYLT RYREGDTKGS AKASDGSSRD 300 AVPNPNSQGQ HIAVPMRGME |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_B | 5e-39 | 171 | 284 | 2 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 5e-39 | 171 | 284 | 2 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019191305.1 | 1e-102 | PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X2 | ||||
Swissprot | Q8VYK4 | 5e-61 | NFYB8_ARATH; Nuclear transcription factor Y subunit B-8 | ||||
TrEMBL | A0A484N325 | 8e-87 | A0A484N325_9ASTE; Uncharacterized protein | ||||
STRING | GLYMA19G36220.2 | 3e-78 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38880.7 | 7e-64 | nuclear factor Y, subunit B1 |
Publications ? help Back to Top | |||
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